| identifier |
I0429 |
| alternative_identifiers |
['SVP38'] |
| country |
Russia |
| continent |
Europe |
| region |
Pontic steppe |
| culture |
Yamnaya |
| epoch |
Bronze Age |
| group |
YAM |
| comment |
- |
| latitude |
53.380001068115234 |
| longitude |
50.38999938964844 |
| sex |
M |
| site |
Lopatino, Sok River, Samara |
| site_detail |
Site II |
| mt_hg |
T2c1a2 |
| ychr_hg |
R1b1a1a2a2 |
| year_from |
-3339 |
| year_to |
-2918 |
| date_detail |
3339-2918 calBCE (4432±66 BP, AA-47804) |
| bp |
4432±66 |
| c14_lab_code |
AA-47804 |
| c14_sample_tag |
True |
| c14_layer_tag |
- |
| avg_coverage |
- |
| sequence_source |
bam |
| reference |
Haak et al. 2015. Massive migration from the steppe was a source for Indo-European languages in Europe. Nature, 522(7555), 207-211.
(link)
|
| data_link |
https://www.ebi.ac.uk/ena/data/view/PRJEB8448
|
| ychr_snps |
['R:F459:18017528G->T', 'R1:P245:8633545T->C', 'R1:P286:17716251C->T', 'R:CTS8311:17930099C->A', 'R:F82:7548900G->A', 'R:P280:21843090C->G', 'R1b1a1a2:L150.1:10008791C->T', 'R1b1:PF6272:23992762C->A', 'R:P224:17285993C->T', 'R1b1a:FGC36:13822833G->T', 'R1b1a:L761:16773870A->G', 'R1:M306:22750583C->A', 'R1:P238:7771131G->A', 'R:CTS7876:17722802G->A', 'R:L1225:22733758C->G', 'R:P227:21409706G->C', 'R:CTS2913:14561760A->G', 'R1b1:L1349:22722580T->C', 'R1b1a1a:CTS3876:15239181G->C', 'R1b1a1a:CTS5082:16005138A->C', 'R1b1a1a:CTS7904:17732408T->C', 'R1b1a1a:L502:19020340G->C', 'R1b1a:L1068:21528257T->C', 'R1b1:L278:18914441C->T', 'R1b:M343:2887824C->A', 'R:P229:8050994G->C', 'R:P232:23035132G->A', 'R1b1a1a2:CTS8591:18095336A->C', 'R1b1a1a2:CTS11468:23124367G->T', 'R1b1a1a2:PF6475:17986687C->A', 'R1b1a1a2:PF6482:18381735A->G', 'R1b1a1a:PF6463:16183412C->A', 'R1b1a:A702:10038192G->A', 'R1b1a:PF6263:21159055C->A', 'R1b1:CTS2134:14193384G->A', 'R1b1:M415:9170545C->A', 'R1b1a1a2a2:Z2105:15747432C->A', 'R1b1:CTS2229:14226692T->A', 'R1b1a1a2a:L23:6753511G->A', 'R1b1a1a2:L482:7863189G->A', 'R1b1a1a2:M269:22739367T->C', 'R1b1a1a2:PF6497:21222868C->G', 'R1b1a1a2:PF6500:21410840G->T', 'R1b1a1a:P297:18656508G->C', 'R1b1a:CTS3063:14637352T->C', 'R1b1a:CTS8436:18026855G->A', 'R1b1a:FGC35:18407611C->T', 'R1:CTS7085:17275703G->A']
|
| mitopathos |
[{'allele': '11251G', 'position': 11251, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-ND4'], 'diseases': ['Reduced risk of PD']}, {'allele': '15928A', 'position': 15928, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-TT'], 'diseases': ['Multiple Sclerosis / idiopathic repeat miscarriage / AD protection']}, {'allele': '4216C', 'position': 4216, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND1'], 'diseases': ['LHON / Insulin Resistance /possible adaptive high altitude variant / miscarriage']}, {'allele': '4917G', 'position': 4917, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND2'], 'diseases': ['LHON / Insulin Resistance / AMD / NRTI-PN']}, {'allele': '6261A', 'position': 6261, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CO1'], 'diseases': ['Prostate Cancer / LHON']}]
|