I0430

FASTA

Metadata

Reference

Data

identifier	I0430
alternative_identifiers	['SVP39']
country	Russia
continent	Europe
region	Pontic steppe
culture	Srubnaya
epoch	Bronze Age
group	SRU
comment	-
latitude	53.08000183105469
longitude	50.36000061035156
sex	M
site	Spiridonovka II, Samara River, Samara
site_detail	-
mt_hg	H3g
ychr_hg	R1a1a1b2a2a
year_from	-1850
year_to	-1600
date_detail	1850-1600 BCE
bp	-
c14_lab_code	-
c14_sample_tag	-
c14_layer_tag	-
avg_coverage	-
sequence_source	bam
reference	Mathieson et al. 2015. Genome-wide patterns of selection in 230 ancient Eurasians. Nature, 528(7583), 499-503. (link)
data_link	https://www.ebi.ac.uk/ena/data/view/PRJEB11450
ychr_snps	['R1a1a:L168:16202177A->G', 'R1a1:M459:6906074A->G', 'R1:CTS2680:14424045C->T', 'R:CTS3622:15078469C->G', 'R:F459:18017528G->T', 'R1:CTS2908:14556851C->T', 'R1:L875:16742224A->G', 'R1:P245:8633545T->C', 'R:CTS2426:14300457G->A', 'R:CTS8311:17930099C->A', 'R:P285:19267344C->A', 'R1:P234:21117888T->C', 'R:P224:17285993C->T', 'R1a1a1:M417:8533735G->A', 'R1a1a:M198:15030752C->T', 'R1a1a:M512:16315153C->T', 'R1a1a:M515:14054623T->A', 'R1a1:Page65.2:2657176C->T', 'R1a:L62:17891241A->G', 'R1a:L63:18162834T->C', 'R1a:L145:14138745C->A', 'R1a:L146:23473201T->A', 'R1:CTS997:7132713G->A', 'R1:M173:15026424A->C', 'R1:M306:22750583C->A', 'R1:P231:9989615A->G', 'R1:P236:17782178C->G', 'R1:P238:7771131G->A', 'R1:P242:7647357G->A', 'R1:P294:7570822G->C', 'R:CTS7876:17722802G->A', 'R:F33:6701239G->A', 'R:F63:7177189G->A', 'R:F295:15594523A->G', 'R:F356:16629782T->C', 'R:F652:23631629C->A', 'R:L1225:22733758C->G', 'R:M207:15581983A->G', 'R:M734:18066156C->T', 'R:P227:21409706G->C', 'R:CTS2913:14561760A->G', 'R1:CTS3123:14674176A->C', 'R:P229:8050994G->C', 'R:P232:23035132G->A', 'R:CTS11075:22934109A->G', 'R1a1a1b2a:F3105:21043448T->C', 'R1a1a1b:S224:8245045C->T', 'R1a1a1b:S441:7683058G->A', 'R1a1a1b2a2a:Z2123:16453077C->T', 'R1a1a1b2:F992:7552356G->A', 'R1:CTS916:7084535G->A']
mitopathos	-