I0433

FASTA

Metadata

Reference

Data

identifier	I0433
alternative_identifiers	['SVP46']
country	Russia
continent	Europe
region	Pontic steppe
culture	Samara_Eneolithic
epoch	Bronze Age
group	YAM
comment	-
latitude	52.220001220703125
longitude	48.099998474121094
sex	M
site	Khvalynsk, Volga River, Samara
site_detail	Site II
mt_hg	U5a1i
ychr_hg	R1a1
year_from	-5200
year_to	-4000
date_detail	5200-4000 BCE
bp	-
c14_lab_code	-
c14_sample_tag	-
c14_layer_tag	-
avg_coverage	-
sequence_source	bam
reference	Mathieson et al. 2015. Genome-wide patterns of selection in 230 ancient Eurasians. Nature, 528(7583), 499-503. (link)
data_link	https://www.ebi.ac.uk/ena/data/view/PRJEB11450
ychr_snps	['R1a1:M459:6906074A->G', 'R:CTS3622:15078469C->G', 'R:M764:21263029G->A', 'R:CTS8311:17930099C->A', 'R:M651:9889199G->A', 'R1a:L145:14138745C->A', 'R1:F93:7671535C->T', 'R1:P231:9989615A->G', 'R1:P236:17782178C->G', 'R1:P238:7771131G->A', 'R:CTS5815:16491135C->T', 'R:F33:6701239G->A', 'R:F652:23631629C->A', 'R:M734:18066156C->T', 'R:CTS11075:22934109A->G']
mitopathos	[{'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '16192T', 'position': 16192, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-CR'], 'diseases': ['Melanoma patients']}, {'allele': '16270T', 'position': 16270, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-CR'], 'diseases': ['Melanoma patients']}, {'allele': '310C', 'position': 310, 'status': 'Reported', 'homoplasmy': '<NA>', 'heteroplasmy': '<NA>', 'locus': ['MT-CR'], 'diseases': ['Possible protective factor for normal tension glaucoma']}, {'allele': '9058G', 'position': 9058, 'status': 'Reported as (1) possible association or as (2) benign', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ATP6'], 'diseases': ['Patients with (1) LVNC cardiomyopathy / (2) autism / intellectual disability / epilepsy']}]