identifier I0433
alternative_identifiers ['SVP46']
country Russia
continent Europe
region Pontic steppe
culture Samara_Eneolithic
epoch Bronze Age
group YAM
comment -
latitude 52.220001220703125
longitude 48.099998474121094
sex M
site Khvalynsk, Volga River, Samara
site_detail Site II
mt_hg U5a1i
ychr_hg R1a1
year_from -5200
year_to -4000
date_detail 5200-4000 BCE
bp -
c14_lab_code -
c14_sample_tag -
c14_layer_tag -
avg_coverage -
sequence_source bam
reference Mathieson et al. 2015. Genome-wide patterns of selection in 230 ancient Eurasians. Nature, 528(7583), 499-503. (link)
data_link https://www.ebi.ac.uk/ena/data/view/PRJEB11450
ychr_snps ['R1a1:M459:6906074A->G', 'R:CTS3622:15078469C->G', 'R:M764:21263029G->A', 'R:CTS8311:17930099C->A', 'R:M651:9889199G->A', 'R1a:L145:14138745C->A', 'R1:F93:7671535C->T', 'R1:P231:9989615A->G', 'R1:P236:17782178C->G', 'R1:P238:7771131G->A', 'R:CTS5815:16491135C->T', 'R:F33:6701239G->A', 'R:F652:23631629C->A', 'R:M734:18066156C->T', 'R:CTS11075:22934109A->G']
mitopathos [{'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '16192T', 'position': 16192, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-CR'], 'diseases': ['Melanoma patients']}, {'allele': '16270T', 'position': 16270, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-CR'], 'diseases': ['Melanoma patients']}, {'allele': '310C', 'position': 310, 'status': 'Reported', 'homoplasmy': '<NA>', 'heteroplasmy': '<NA>', 'locus': ['MT-CR'], 'diseases': ['Possible protective factor for normal tension glaucoma']}, {'allele': '9058G', 'position': 9058, 'status': 'Reported as (1) possible association or as (2) benign', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ATP6'], 'diseases': ['Patients with (1) LVNC cardiomyopathy / (2) autism / intellectual disability / epilepsy']}]