I0438

FASTA

Metadata

Reference

Data

identifier I0438
alternative_identifiers ['SVP50']
country Russia
continent Europe
region Pontic steppe
culture Yamnaya
epoch Bronze Age
group YAM
comment -
latitude 53.380001068115234
longitude 50.380001068115234
sex M
site Luzkhi, Samara River, Samara
site_detail Site I
mt_hg U5a1a1
ychr_hg R1b1a1a2a2
year_from -3021
year_to -2635
date_detail 3021-2635 calBCE (4254±61 BP, AA-47807)
bp 4254±61
c14_lab_code AA-47807
c14_sample_tag True
c14_layer_tag -
avg_coverage -
sequence_source bam
reference Haak et al. 2015. Massive migration from the steppe was a source for Indo-European languages in Europe. Nature, 522(7555), 207-211. (link)
data_link https://www.ebi.ac.uk/ena/data/view/PRJEB8448
ychr_snps ['R:M764:21263029G->A', 'R1:CTS2565:14366723C->T', 'R1:CTS5611:16394489T->G', 'R1:P286:17716251C->T', 'R:F82:7548900G->A', 'R:P285:19267344C->A', 'R1b1:PF6272:23992762C->A', 'R1:P234:21117888T->C', 'R1b1a:FGC36:13822833G->T', 'R1b1a:L761:16773870A->G', 'R1:F93:7671535C->T', 'R1:P238:7771131G->A', 'R:CTS7880:17723850C->T', 'R:F33:6701239G->A', 'R:F63:7177189G->A', 'R:F356:16629782T->C', 'R:F652:23631629C->A', 'R:FGC1168:15667208G->C', 'R:M734:18066156C->T', 'R1b1a1a:CTS3876:15239181G->C', 'R1b1a1a:CTS5082:16005138A->C', 'R1b1a:L1068:21528257T->C', 'R:F154:8558505T->C', 'R:P232:23035132G->A', 'R1b1a1a:CTS9018:18617596C->T', 'R1b1a1a2:CTS8591:18095336A->C', 'R1b1a1a2:CTS11468:23124367G->T', 'R1b1a1a2:L773:7220727A->G', 'R1b1a1a2:PF6475:17986687C->A', 'R1b1a1a2:PF6495:20828795G->A', 'R1b1a1a:CTS11985:23403749G->A', 'R1b1a1a:FGC57:7759944G->A', 'R1b1a1a:PF6463:16183412C->A', 'R1b1a:PF6263:21159055C->A', 'R1b1:CTS2134:14193384G->A', 'R1b1:M415:9170545C->A', 'R1b1a1a2a2:Z2105:15747432C->A', 'R1b1a1a2a:L23:6753511G->A', 'R1b1a1a2:L482:7863189G->A', 'R1b1a1a2:PF6430:8070532T->A', 'R1b1a1a2:PF6434:8411202A->G', 'R1b1a1a:PF6498:21312064C->A', 'R1b1a:CTS3063:14637352T->C', 'R1b1a:FGC41:7900883C->A', 'R1b1a:FGC35:18407611C->T', 'R1b1a1a:PF6506:21801722G->A', 'R1b1a:A702:10038192G->Ahet']
mitopathos [{'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '15924G', 'position': 15924, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-TT'], 'diseases': ['LIMM']}, {'allele': '16270T', 'position': 16270, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-CR'], 'diseases': ['Melanoma patients']}]