I0439

FASTA

Metadata

Reference

Data

identifier	I0439
alternative_identifiers	['SVP52']
country	Russia
continent	Europe
region	Pontic steppe
culture	Yamnaya
epoch	Bronze Age
group	YAM
comment	-
latitude	53.380001068115234
longitude	50.38999938964844
sex	M
site	Lopatino, Sok River, Samara
site_detail	Site II
mt_hg	U5a1a1
ychr_hg	R1b1a1a2
year_from	-3321
year_to	-2921
date_detail	3321-2921 calBCE (4420±30 BP, Beta-392491)
bp	4420±30
c14_lab_code	Beta-392491
c14_sample_tag	True
c14_layer_tag	-
avg_coverage	-
sequence_source	bam
reference	Haak et al. 2015. Massive migration from the steppe was a source for Indo-European languages in Europe. Nature, 522(7555), 207-211. (link)
data_link	https://www.ebi.ac.uk/ena/data/view/PRJEB8448
ychr_snps	['R:F459:18017528G->T', 'R:L1347:22818334C->T', 'R1:L875:16742224A->G', 'R1:P286:17716251C->T', 'R:M718:17334694G->T', 'R:P224:17285993C->T', 'R1:M306:22750583C->A', 'R:F652:23631629C->A', 'R:FGC1168:15667208G->C', 'R:M760:21219443A->G', 'R:M799:23134896C->T', 'R1b1a1a2:PF6475:17986687C->A', 'R1b1a1a:FGC57:7759944G->A', 'R1b1a:PF6263:21159055C->A', 'R1b1a1a2:L1353:19179540G->A', 'R1b1a1a2:PF6434:8411202A->G', 'R1b1a1a:P297:18656508G->C', 'R1b1a1a:PF6451:14116584T->A', 'R1b1:CTS910:7081561C->T']
mitopathos	[{'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '15924G', 'position': 15924, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-TT'], 'diseases': ['LIMM']}, {'allele': '16270T', 'position': 16270, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-CR'], 'diseases': ['Melanoma patients']}, {'allele': '310C', 'position': 310, 'status': 'Reported', 'homoplasmy': '<NA>', 'heteroplasmy': '<NA>', 'locus': ['MT-CR'], 'diseases': ['Possible protective factor for normal tension glaucoma']}]