I0551

FASTA

Metadata

Reference

Data

identifier	I0551
alternative_identifiers	['SALZ3B']
country	Germany
continent	Europe
region	central Europe
culture	Salzmünde
epoch	Neolithic
group	SMC
comment	-
latitude	51.529998779296875
longitude	11.829999923706055
sex	M
site	Salzmünde-Schiebzig
site_detail	-
mt_hg	U3a1
ychr_hg	G2a2a
year_from	-3400
year_to	-3025
date_detail	3400-3025 BCE
bp	-
c14_lab_code	-
c14_sample_tag	-
c14_layer_tag	-
avg_coverage	-
sequence_source	bam
reference	Mathieson et al. 2015. Genome-wide patterns of selection in 230 ancient Eurasians. Nature, 528(7583), 499-503. (link)
data_link	https://www.ebi.ac.uk/ena/data/view/PRJEB11450
ychr_snps	['G:CTS9011:18615020A->T', 'G:L770:2863466A->T', 'G:M3450:6931141C->G', 'G:M3593:21648433C->G', 'G2:F1189:8427005A->G', 'G2:F1647:9907842G->T', 'G2:M3469:7823146G->T', 'G2:CTS5666:16424034C->T', 'G:M3595:21671839C->T', 'G2a2a:PF3185:22894488C->T', 'G:CTS1259:7298419C->A']
mitopathos	[{'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '150T', 'position': 150, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['Longevity / Cervical Carcinoma / HPV infection risk']}, {'allele': '16390A', 'position': 16390, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CR'], 'diseases': ['POAG - potential for association']}, {'allele': '3010A', 'position': 3010, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-RNR2'], 'diseases': ['Cyclic Vomiting Syndrome with Migraine / high altitude disease risk factor']}]