I0585

FASTA

Metadata

Reference

Data

identifier I0585
alternative_identifiers ['LaBrana1', 'La_Brana_1', 'LaBra1']
country Spain
continent Europe
region Iberia
culture Hunter-Gatherer
epoch Mesolithic
group HGW
comment -
latitude 42.90999984741211
longitude -5.380000114440918
sex M
site La Brana-Arintero, Leon
site_detail -
mt_hg U5b2c
ychr_hg C1a2
year_from -5983
year_to -5747
date_detail 5983-5747 calBCE (6980±50 BP, Beta-226472)
bp 6980±50
c14_lab_code Beta-226472
c14_sample_tag True
c14_layer_tag -
avg_coverage -
sequence_source bam
reference Olalde et al. 2014. Derived immune and ancestral pigmentation alleles in a 7,000-year-old Mesolithic European. Nature, 507(7491), 225-228. (link)
data_link https://www.ncbi.nlm.nih.gov/sra?term=PRJNA230689
ychr_snps ['C1a2:V20:6845955G->A', 'C1:CTS6773:17100606C->T', 'C:CTS2955:14587658T->C', 'C:CTS6266:16780809G->A', 'C:CTS7301:17412198T->C', 'C:CTS10720:22726491C->T', 'C:CTS11598:23185632A->G', 'C:F847:6879365C->T', 'C:F1029:7629098T->C', 'C:F1804:14603298C->T', 'C:F2678:18030738C->T', 'C:F3043:19411754G->A', 'C:F3395:23031841G->A', 'C:Y1767:21186558A->G', 'C:Z3958:7869808C->T', 'C:Z3986:9076205C->T', 'C:Z4099:22168468A->G', 'C:Z4139:23388830T->A', 'C1a2:Y10458:14400573C->A', 'C1a2:Y11417:16912050A->G', 'C1a2:Y11594:21183344G->A', 'C1a2:Z28838:13670713A->T', 'C:CTS182:2790145C->G', 'C:CTS3223:14755880C->T', 'C:CTS4676:15762839A->G', 'C:CTS5958:16574499A->C', 'C:CTS8769:18186596C->T', 'C:CTS9679:19022181A->C', 'C:CTS11544:23158264C->G', 'C:CTS11820:23294948T->C', 'C:F1241:8482631G->C', 'C:F1288:8537273G->A', 'C:F1367:8640245C->G', 'C:F1727:14206892C->T', 'C:F1911:15097043C->T', 'C:F2253:16757900C->T', 'C:F2434:17270957A->C', 'C:F2449:17341195G->T', 'C:F2869:18843140C->T', 'C:F2888:18890063C->T', 'C:F2909:18964479C->T', 'C:F2969:19182853C->G', 'C:F3319:22575539A->G', 'C:F3462:23553006C->T', 'C:F3712:17957903T->C', 'C:F3719:22937380C->A', 'C:M130:2734854C->T', 'C:Y2798:13865051G->T', 'C:Y6691:15896404A->G', 'C:Z3977:8673832C->T', 'C:Z3983:8856026G->A', 'C:Z4004:13228027G->T', 'C:Z4014:13656195T->A', 'C:Z4073:21566042C->T', 'C:Z4083:21809035G->A', 'C:Z4091:21974190T->C', 'C:Z7177:8668533C->T', 'C1a2:Y11474:21771914C->T', 'C1a2:Y12186:18110362T->C', 'C:CTS2377:14281450G->A', 'C:CTS5813:16490115G->A', 'C:CTS7930:17748163T->C', 'C:CTS10083:19246276T->A', 'C:CTS10707:22714249G->A', 'C:CTS10782:22775162C->A', 'C:CTS12472:28588986G->T', 'C:F1217:8454895T->C', 'C:F2803:18663706C->G', 'C:IMS-JST029149:2803297C->T', 'C:P260:17286006A->C', 'C:Y4496:8127435A->G', 'C:Z3981:8822474C->A', 'C1a2:V1876:8395859A->C', 'C:CTS3221:14742373C->T', 'C:CTS5441:16275407C->T', 'C:Z7144:7310355C->T', 'C:CTS10442:19457443A->G', 'C:F1871:14954047C->T', 'C:F2774:18572332T->C', 'C:P255:8685038G->A', 'C:V1234:7584247G->C', 'C:CTS4032:15344716A->C', 'C:Z7785:13643760C->T', 'C:CTS2550:14359235G->A', 'C:Z4059:21291275G->A', 'C:CTS4686:15769171C->T', 'C:CTS4934:15909160C->T', 'C:F909:7090393C->T', 'C:F1743:14263271G->A', 'C:F1865:14924643G->T', 'C:F2258:16768835C->T', 'C:F2446:17328425C->T', 'C:F3400:23067770A->G', 'C:F3877:8746792G->A', 'C:M216:15437564C->T', 'C:V199:2772928C->A', 'C:Y2799:21875538T->Chet', 'C:Y4481:7947749C->T', 'C:Y6693:8143636G->A', 'C:CTS8148:17851862C->T', 'C1a2:V1535:7953413G->C', 'C1a2:Y11472:21688302C->Thet', 'C1a2:Y11479:22038133T->C', 'C1a:CTS3454:14939742C->G', 'C:CTS1606:13985147C->T', 'C:CTS6378:16863918C->A', 'C:F3388:23020085A->Thet', 'C:V77:17947542C->T']
mitopathos [{'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '13637G', 'position': 13637, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Possible LHON factor']}, {'allele': '150T', 'position': 150, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['Longevity / Cervical Carcinoma / HPV infection risk']}, {'allele': '16192T', 'position': 16192, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-CR'], 'diseases': ['Melanoma patients']}, {'allele': '16270T', 'position': 16270, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-CR'], 'diseases': ['Melanoma patients']}]