I0634

FASTA

Metadata

Reference

Data

identifier	I0634
alternative_identifiers	['NG19/8', 'Grave 8', 'inv. K19']
country	Serbia
continent	Europe
region	Balkans
culture	Balkans_Neolithic
epoch	Neolithic
group	NEBA
comment	-
latitude	44.900001525878906
longitude	19.75
sex	M
site	Gomolava, Hrtkovci, Vojvodina
site_detail	-
mt_hg	K1a4
ychr_hg	G2a2a1a
year_from	-4710
year_to	-4504
date_detail	4710-4504 calBCE (5760±40 BP, Poz-82185)
bp	5760±40
c14_lab_code	Poz-82185
c14_sample_tag	True
c14_layer_tag	-
avg_coverage	-
sequence_source	bam
reference	Mathieson et al. 2018. The genomic history of southeastern Europe. Nature, 555(7695), 197-203. (link)
data_link	https://www.ebi.ac.uk/ena/data/view/PRJEB22652
ychr_snps	['G2a2:CTS4367:15615340C->G', 'G2a:F2529:17571517A->G', 'G2a:F3088:20813445G->A', 'G2a:F4086:7727677C->T', 'G2a:L31:14028148C->A', 'G2a:P15:23244026C->T', 'G2a:PF3141:23973594T->G', 'G2:CTS1900:14116322T->A', 'G2:CTS7662:17597715C->T', 'G2:F1239:8482393C->T', 'G2:F1393:8719593G->A', 'G2:F3198:21401188G->T', 'G2:F3344:22697266G->A', 'G2:F3536:23768744C->T', 'G2:L89:7978725C->T', 'G2:M3446:6685638A->C', 'G2:M3579:21147058A->G', 'G:CTS34:2681740G->A', 'G:CTS692:6955839A->G', 'G:CTS1013:7145960C->T', 'G:CTS1283:7309873T->G', 'G:CTS2251:14235140C->T', 'G:CTS2271:14243137C->T', 'G:CTS2357:14273557C->T', 'G:CTS4761:15802681C->T', 'G:CTS6957:17210745C->T', 'G:CTS7092:17281783G->A', 'G:CTS7269:17393643T->C', 'G:CTS8023:17798903T->C', 'G:CTS8531:18070349G->C', 'G:CTS9011:18615020A->T', 'G:CTS9593:18979775T->A', 'G:CTS10026:19215139A->T', 'G:CTS10945:22848965A->G', 'G:CTS11185:22997377C->G', 'G:CTS11331:23074190A->G', 'G:CTS11911:23346582A->C', 'G:F1131:8240725C->T', 'G:F1383:8700380C->T', 'G:F1551:9448354A->G', 'G:F2076:16185081A->G', 'G:F2906:18957208C->T', 'G:L116:14989721C->G', 'G:L382:14469411C->A', 'G:L522:17533325A->C', 'G:L770:2863466A->T', 'G:L837:17853245A->G', 'G:M3258:7992031T->C', 'G:M3432:23578115C->G', 'G:M3450:6931141C->G', 'G:M3468:7744050T->C', 'G:M3472:7899682T->C', 'G:M3473:7927218C->T', 'G:M3479:8231862G->C', 'G:M3482:8454233G->A', 'G:M3485:8563874C->T', 'G:M3486:8600158A->T', 'G:M3593:21648433C->G', 'G:M3597:21865624G->A', 'G:M3599:21939157G->A', 'G:M3609:22651339C->T', 'G:M3628:23793740C->A', 'G:P257:14432928G->A', 'G:PF2920:13824120T->G', 'G:PF2952:14577177G->A', 'G:PF3045:20823823C->T', 'G:PF3134:15275200C->G', 'G:S1435:13658486C->Ghet', 'G:U21:15204710A->C', 'G:Z3262:13676268G->A', 'G:Z6325:13806058C->T', 'G2a:CTS5416:16262350C->T', 'G2a:Z3240:10060449A->G', 'G2:CTS4264:15528792T->C', 'G2:CTS4413:15635425T->C', 'G2:CTS4703:15776024C->T', 'G2:F3226:21663882C->A', 'G2:L156:17174741A->T', 'G2:M3488:8687693T->A', 'G2:PF2909:13205148A->G', 'G2:PF3119:23739606G->T', 'G:CTS373:6716150T->C', 'G:CTS995:7132348G->C', 'G:CTS2125:14190447A->G', 'G:CTS2136:14195292A->G', 'G:CTS2517:14338503C->T', 'G:CTS4523:15693336G->A', 'G:CTS5504:16325291T->C', 'G:CTS9710:19033112G->A', 'G:CTS9894:19124322A->T', 'G:CTS10721:22729194C->T', 'G:CTS11907:23343857C->G', 'G:L154:8614138T->G', 'G:L402:15204708T->G', 'G:L605:18393536G->C', 'G:L836:16896148G->A', 'G:M3264:8318375G->T', 'G:M3266:8422993T->A', 'G:M3274:8865637G->A', 'G:M3464:7537950C->T', 'G:M3466:7614386G->A', 'G:M3470:7830068T->C', 'G:M3471:7840218C->A', 'G:M3481:8387539G->A', 'G:M3580:21162869C->G', 'G:M3585:21412501G->A', 'G:Page94:2846401C->T', 'G:PF2836:6478903G->A', 'G:U12:14639427A->C', 'G2a:CTS6753:17090976C->T', 'G2a:F1980:15660640C->T', 'G:CTS4479:15667235G->A', 'G:CTS5757:16469840A->G', 'G:CTS9707:19030998C->A', 'G:CTS11400:23095144A->G', 'G:CTS12654:28658660G->T', 'G:M3595:21671839C->T', 'G2a2a1:PF3170:18090604G->A', 'G2a2a:PF3147:7738069G->A', 'G2a2a:PF3168:17572142T->C', 'G2a2a:PF3181:21808944C->A', 'G2a2a:PF3184:22576860C->T', 'G2a2a:PF3185:22894488C->T', 'G:CTS5837:16499780T->A', 'G2a2a1:PF3155:14006343T->C', 'G2a2a1:PF3160:14926732C->T', 'G2a2a1a:PF3177:21327198C->T', 'G:M3248:7565637G->A', 'G2a2a:PF3166:16735582T->G', 'G:CTS10280:19369881T->C', 'G:CTS1613:13987899A->T', 'G2a2a:PF6827:2830780A->G', 'G:M3514:14199646A->T', 'G2a2a1:PF3148:7816492G->A', 'G2a2a:PF3180:21600446A->T', 'G2a2a:PF3176:21185138G->C', 'G2a2a:PF3182:21822756C->T', 'G:PF2918:13679469G->Ahet', 'G:PF3123:24357567A->G']
mitopathos	[{'allele': '10398G', 'position': 10398, 'status': 'Reported / lineage L & M marker / also hg IJK', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND3'], 'diseases': ['PD protective factor / longevity / altered cell pH / metabolic syndrome / breast cancer risk / Leigh Syndrome risk / ADHD / cognitive decline / SCA2 age of onset / Fuchs endothelial corneal dystrophy']}, {'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '9055A', 'position': 9055, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ATP6'], 'diseases': ['PD protective factor']}]