I0676

FASTA

Metadata

Reference

Data

identifier I0676
alternative_identifiers ['MACE7', 'KV VIII', 'SE 513']
country Macedonia
continent Europe
region Balkans
culture Macedonia_Neolithic
epoch Neolithic
group NEBA
comment -
latitude 41.900001525878906
longitude 21.350000381469727
sex M
site Govrlevo, Sopi_te, Skopje
site_detail -
mt_hg J1c1
ychr_hg G2a2b2b1
year_from -5979
year_to -5735
date_detail 5979-5735 calBCE (6960±50 BP, Poz-82188)
bp 6960±50
c14_lab_code Poz-82188
c14_sample_tag True
c14_layer_tag -
avg_coverage -
sequence_source bam
reference Mathieson et al. 2018. The genomic history of southeastern Europe. Nature, 555(7695), 197-203. (link)
data_link https://www.ebi.ac.uk/ena/data/view/PRJEB22652
ychr_snps ['G2a2b:F2535:17589788C->T', 'G2a2b:F3139:21151007T->C', 'G2a2b:L32:14692227T->C', 'G2a2b:L190:18759690C->T', 'G2a2b:Z3260:13671506G->T', 'G2a2:CTS4367:15615340C->G', 'G2a:F3088:20813445G->A', 'G2a:F4086:7727677C->T', 'G2a:L31:14028148C->A', 'G2a:P15:23244026C->T', 'G2a:PF3141:23973594T->G', 'G2:CTS10089:19248446G->A', 'G2:F1239:8482393C->T', 'G2:F1294:8545324T->A', 'G2:F3070:19493301A->G', 'G2:F3220:21637589G->C', 'G2:F3344:22697266G->A', 'G2:F3536:23768744C->T', 'G2:L89:7978725C->T', 'G2:M3446:6685638A->C', 'G2:M3579:21147058A->G', 'G2:P287:22072097G->T', 'G:CTS34:2681740G->A', 'G:CTS175:2785630A->T', 'G:CTS692:6955839A->G', 'G:CTS1013:7145960C->T', 'G:CTS1283:7309873T->G', 'G:CTS2251:14235140C->T', 'G:CTS2271:14243137C->T', 'G:CTS2357:14273557C->T', 'G:CTS4238:15504804C->T', 'G:CTS4761:15802681C->T', 'G:CTS7092:17281783G->A', 'G:CTS7674:17610571G->A', 'G:CTS8023:17798903T->C', 'G:CTS8531:18070349G->C', 'G:CTS9011:18615020A->T', 'G:CTS9593:18979775T->A', 'G:CTS10026:19215139A->T', 'G:CTS11228:23023554C->A', 'G:CTS11529:23151673T->C', 'G:CTS11911:23346582A->C', 'G:CTS13035:28783924C->A', 'G:F1131:8240725C->T', 'G:F1383:8700380C->T', 'G:F1551:9448354A->G', 'G:L116:14989721C->G', 'G:L382:14469411C->A', 'G:L522:17533325A->C', 'G:L770:2863466A->T', 'G:L837:17853245A->G', 'G:M3468:7744050T->C', 'G:M3473:7927218C->T', 'G:M3474:7930724C->A', 'G:M3479:8231862G->C', 'G:M3480:8327892T->A', 'G:M3482:8454233G->A', 'G:M3485:8563874C->T', 'G:M3486:8600158A->T', 'G:M3597:21865624G->A', 'G:M3599:21939157G->A', 'G:M3609:22651339C->T', 'G:P257:14432928G->A', 'G:PF2918:13679469G->A', 'G:PF2920:13824120T->G', 'G:PF2952:14577177G->A', 'G:PF3045:20823823C->T', 'G:PF3134:15275200C->G', 'G:U21:15204710A->C', 'G:Z3262:13676268G->A', 'G2a2b:CTS10006:19205722C->T', 'G2a2b:F2184:16512478G->A', 'G2a2b:L30:15604899C->T', 'G2:CTS4413:15635425T->C', 'G2:CTS6316:16817402C->T', 'G2:CTS9885:19119067C->T', 'G2:F2319:16903051A->T', 'G2:F3226:21663882C->A', 'G2:M3465:7571775G->T', 'G2:M3469:7823146G->T', 'G2:PF2909:13205148A->G', 'G2:PF3119:23739606G->T', 'G:CTS995:7132348G->C', 'G:CTS2120:14188094G->T', 'G:CTS2125:14190447A->G', 'G:CTS2136:14195292A->G', 'G:CTS2517:14338503C->T', 'G:CTS4101:15397649A->G', 'G:CTS4749:15797043A->G', 'G:CTS5317:16203361G->C', 'G:CTS5414:16261165C->T', 'G:CTS5504:16325291T->C', 'G:CTS5640:16408569G->A', 'G:CTS6483:16929270C->T', 'G:CTS9710:19033112G->A', 'G:CTS9894:19124322A->T', 'G:CTS10721:22729194C->T', 'G:CTS11294:23059496G->A', 'G:L154:8614138T->G', 'G:L402:15204708T->G', 'G:L836:16896148G->A', 'G:M201:15027529G->T', 'G:M3264:8318375G->T', 'G:M3266:8422993T->A', 'G:M3464:7537950C->T', 'G:M3466:7614386G->A', 'G:M3470:7830068T->C', 'G:M3471:7840218C->A', 'G:M3580:21162869C->G', 'G:M3585:21412501G->A', 'G:M3586:21447363A->G', 'G:M3600:21954611G->A', 'G:Page94:2846401C->T', 'G:S1435:13658486C->G', 'G2a:CTS6026:16620480C->T', 'G2a:CTS6753:17090976C->T', 'G2:CTS5666:16424034C->T', 'G:CTS1010:7143549C->T', 'G:CTS4479:15667235G->A', 'G:CTS10706:22714204G->T', 'G:M3487:8602816G->C', 'G:CTS827:7038432C->G', 'G2a:F1975:15588776A->C', 'G2a:CTS9318:18819146T->A', 'G:CTS282:2871867A->G', 'G:CTS10393:19434150G->T', 'G:M3248:7565637G->A', 'G:M3476:8064458A->G', 'G:M3583:21362016T->C', 'G2a2b2b:PF3321:7163800G->A', 'G2a2b2b:F705:2659191T->C', 'G:CTS9190:18737609C->A', 'G2a2b2b:F1581:9646643G->C', 'G2a2b2b:F2419:17192221G->A', 'G2a2b2b:PF3359:7877472G->A', 'G2a2b2b:PF3418:21332310G->A', 'G2a2b2b1:F1193:8429419C->T', 'G2a2b2b:F1175:8399197G->A', 'G2a2b2b:F2037:15928755C->T', 'G2a2b2b:PF3404:17632283G->A']
mitopathos [{'allele': '11251G', 'position': 11251, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-ND4'], 'diseases': ['Reduced risk of PD']}, {'allele': '10398G', 'position': 10398, 'status': 'Reported / lineage L & M marker / also hg IJK', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND3'], 'diseases': ['PD protective factor / longevity / altered cell pH / metabolic syndrome / breast cancer risk / Leigh Syndrome risk / ADHD / cognitive decline / SCA2 age of onset / Fuchs endothelial corneal dystrophy']}, {'allele': '13708A', 'position': 13708, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-ND5'], 'diseases': ['LHON / Increased MS risk / higher freq in PD-ADS']}, {'allele': '185A', 'position': 185, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CR'], 'diseases': ['Low VO2max response']}, {'allele': '295T', 'position': 295, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CR'], 'diseases': ['Low VO2max response']}, {'allele': '3010A', 'position': 3010, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-RNR2'], 'diseases': ['Cyclic Vomiting Syndrome with Migraine / high altitude disease risk factor']}, {'allele': '228A', 'position': 228, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CR'], 'diseases': ['Low VO2max response']}, {'allele': '3394C', 'position': 3394, 'status': 'Reported / Population-dependent', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND1'], 'diseases': ['LHON / Diabetes / CPTdeficiency / high altitude adaptation']}, {'allele': '4216C', 'position': 4216, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND1'], 'diseases': ['LHON / Insulin Resistance /possible adaptive high altitude variant / miscarriage']}, {'allele': '462T', 'position': 462, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CR'], 'diseases': ['Low VO2max response']}, {'allele': '489C', 'position': 489, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CR'], 'diseases': ['Low VO2max response']}]