I0700

FASTA

Metadata

Reference

Data

identifier	I0700
alternative_identifiers	['MP5']
country	Bulgaria
continent	Europe
region	Balkans
culture	Balkans_MP_Neolithic
epoch	Neolithic
group	NEBA
comment	1st degree relative of I1108
latitude	43.97999954223633
longitude	26.399999618530273
sex	M
site	Malak Preslavets
site_detail	-
mt_hg	T2e
ychr_hg	T1a1a
year_from	-5800
year_to	-5400
date_detail	5800-5400 calBCE
bp	-
c14_lab_code	-
c14_sample_tag	True
c14_layer_tag	-
avg_coverage	-
sequence_source	bam
reference	Mathieson et al. 2018. The genomic history of southeastern Europe. Nature, 555(7695), 197-203. (link)
data_link	https://www.ebi.ac.uk/ena/data/view/PRJEB22652
ychr_snps	['T1a:M70:21893881A->C', 'T1a1a:CTS4916:15900621G->A', 'T1a1:CTS5542:16350661A->C', 'T1a1:CTS5690:16433905C->G', 'T1a1:L454:14577272C->T', 'T1a:PF7481:21667740A->G', 'T:CTS493:6794129G->A', 'T:CTS573:6854139C->T', 'T:CTS4201:15473615C->T', 'T:CTS5035:15973979C->A', 'T:PF5568:21532604G->A', 'T:PF5609:8886086G->A', 'T:PF5661:21703373C->A', 'T:PF7480:21481191C->G']
mitopathos	[{'allele': '11251G', 'position': 11251, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-ND4'], 'diseases': ['Reduced risk of PD']}, {'allele': '150T', 'position': 150, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['Longevity / Cervical Carcinoma / HPV infection risk']}, {'allele': '15928A', 'position': 15928, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-TT'], 'diseases': ['Multiple Sclerosis / idiopathic repeat miscarriage / AD protection']}, {'allele': '4216C', 'position': 4216, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND1'], 'diseases': ['LHON / Insulin Resistance /possible adaptive high altitude variant / miscarriage']}, {'allele': '4917G', 'position': 4917, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND2'], 'diseases': ['LHON / Insulin Resistance / AMD / NRTI-PN']}]