I0706

FASTA

Metadata

Reference

Data

identifier	I0706
alternative_identifiers	['DZHU 10']
country	Bulgaria
continent	Europe
region	Balkans
culture	Balkans_Dzhulyunitsa_Neolithic
epoch	Neolithic
group	NEBA
comment	-
latitude	43.15999984741211
longitude	25.8799991607666
sex	M
site	Dzhulyunitsa
site_detail	-
mt_hg	K1a4b
ychr_hg	C
year_from	-6022
year_to	-5887
date_detail	6022-5887 calBCE (7075±37 BP, OxA-32777)
bp	7075±37
c14_lab_code	OxA-32777
c14_sample_tag	True
c14_layer_tag	-
avg_coverage	-
sequence_source	bam
reference	Mathieson et al. 2018. The genomic history of southeastern Europe. Nature, 555(7695), 197-203. (link)
data_link	https://www.ebi.ac.uk/ena/data/view/PRJEB22652
ychr_snps	['C:Y1767:21186558A->G', 'C:F1367:8640245C->G', 'C:F2888:18890063C->T', 'C:F2969:19182853C->G', 'C:Y2798:13865051G->T', 'C:Y4496:8127435A->G', 'C:F2774:18572332T->C']
mitopathos	[{'allele': '10398G', 'position': 10398, 'status': 'Reported / lineage L & M marker / also hg IJK', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND3'], 'diseases': ['PD protective factor / longevity / altered cell pH / metabolic syndrome / breast cancer risk / Leigh Syndrome risk / ADHD / cognitive decline / SCA2 age of onset / Fuchs endothelial corneal dystrophy']}, {'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '16093C', 'position': 16093, 'status': 'Reported', 'homoplasmy': '-', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['Cyclic Vomiting Syndrome']}, {'allele': '9055A', 'position': 9055, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ATP6'], 'diseases': ['PD protective factor']}]