I0708

FASTA

Metadata

Reference

Data

identifier I0708
alternative_identifiers ['BAR6', 'L11-439']
country Turkey
continent Asia
region Anatolia
culture Anatolia_Neolithic
epoch Neolithic
group NENE
comment -
latitude 40.29999923706055
longitude 29.56999969482422
sex M
site Barc─▒n, Marmara Region, Northwest Anatolia
site_detail -
mt_hg N1b1a
ychr_hg J2a
year_from -6500
year_to -6200
date_detail 6500-6200 BCE
bp -
c14_lab_code -
c14_sample_tag -
c14_layer_tag -
avg_coverage -
sequence_source bam
reference Mathieson et al. 2015. Genome-wide patterns of selection in 230 ancient Eurasians. Nature, 528(7583), 499-503. (link)
data_link https://www.ebi.ac.uk/ena/data/view/PRJEB11450
ychr_snps ['J2a:L152:22243566C->T', 'J2a:L212:22711465T->C', 'J2a:L559:21674327A->G', 'J2a:M410:2751678A->G', 'J2:L228:7771358C->T', 'J2:M172:14969634T->G', 'J:CTS687:6953311A->T', 'J:CTS852:7048870G->A', 'J:CTS1033:7163234A->G', 'J:CTS1250:7296343G->T', 'J:CTS2769:14476551T->A', 'J:CTS3732:15138096A->G', 'J:CTS3936:15277466G->A', 'J:CTS4204:15476324G->A', 'J:CTS5280:16180103A->G', 'J:CTS5628:16401405C->G', 'J:CTS5678:16427564A->T', 'J:CTS7028:17246058T->C', 'J:CTS7229:17367321C->A', 'J:CTS7738:17637446T->C', 'J:CTS8078:17827486C->T', 'J:CTS9877:19117262A->G', 'J:CTS10446:19460042G->C', 'J:CTS10858:22808236G->A', 'J:CTS11571:23163701C->A', 'J:CTS11750:23250894C->T', 'J:CTS11765:23255729A->T', 'J:CTS11787:23273016G->A', 'J:CTS12047:23443976A->Ghet', 'J:F1167:8393499G->A', 'J:F1181:8418927G->C', 'J:F1826:14705645G->A', 'J:F2114:16262942G->A', 'J:F2116:16268345C->G', 'J:F2174:16475682C->T', 'J:F2502:17495914G->A', 'J:F2746:18257026G->A', 'J:F2817:18695159C->T', 'J:F2839:18773505C->T', 'J:F3119:21097847C->T', 'J:F3176:21329083T->C', 'J:F3358:22785217G->A', 'J:F4300:21144433T->A', 'J:FGC1599:21923739A->T', 'J:L60:14237131C->T', 'J:L778:23088142T->C', 'J:M304:22749853A->C', 'J:P209:19179335T->C', 'J:PF4498:5236804A->C', 'J:PF4505:7065239T->C', 'J:PF4513:7759610C->T', 'J:PF4519:8669451C->G', 'J:PF4524:10009851G->Ahet', 'J:PF4530:13597365C->T', 'J:PF4572:17996247A->G', 'J:PF4575:18410799A->G', 'J:PF4594:21495992C->A', 'J:PF4595:21858778C->A', 'J:PF4605:22506256G->T', 'J:S22619:21144432C->A', 'J:YSC0000228:22172960G->T', 'J:Z7829:22465433G->C']
mitopathos [{'allele': '12705T', 'position': 12705, 'status': 'Reported', 'homoplasmy': '<NA>', 'heteroplasmy': '<NA>', 'locus': ['MT-CO1'], 'diseases': ['Possible protective factor for normal tension glaucoma']}, {'allele': '16390A', 'position': 16390, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CR'], 'diseases': ['POAG - potential for association']}, {'allele': '8836G', 'position': 8836, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ATP6'], 'diseases': ['LHON']}]