I0709

FASTA

Metadata

Reference

Data

identifier I0709
alternative_identifiers ['BAR20', 'M13-170']
country Turkey
continent Asia
region Anatolia
culture Anatolia_Neolithic
epoch Neolithic
group NENE
comment -
latitude 40.29999923706055
longitude 29.56999969482422
sex M
site Barc─▒n, Marmara Region, Northwest Anatolia
site_detail -
mt_hg U3
ychr_hg H2
year_from -6500
year_to -6200
date_detail 6500-6200 BCE
bp -
c14_lab_code -
c14_sample_tag -
c14_layer_tag -
avg_coverage -
sequence_source bam
reference Mathieson et al. 2015. Genome-wide patterns of selection in 230 ancient Eurasians. Nature, 528(7583), 499-503. (link)
data_link https://www.ebi.ac.uk/ena/data/view/PRJEB11450
ychr_snps ['H2:L279:6932824G->T', 'H2:L281:8353840T->G', 'H2:L284:15604862C->T', 'H2:L285:21869856C->T', 'H2:L286:21890111T->C', 'H2:M282:21764431T->C', 'H2:P96:14869743C->A', 'H:M2713:6855809G->A', 'H:M2896:16919982C->T', 'H:M2920:17476211G->T', 'H:M2936:17800761T->C', 'H:M2955:18182848G->T', 'H:M2992:19535440A->T', 'H:M3052:22701876C->G', 'H:M3058:22951796G->A', 'H:M3062:23033176G->A', 'H:M3070:23153863T->A', 'H:Z4309:19563853G->C', 'H:Z13964:8781791G->A']
mitopathos [{'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '150T', 'position': 150, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['Longevity / Cervical Carcinoma / HPV infection risk']}, {'allele': '15928A', 'position': 15928, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-TT'], 'diseases': ['Multiple Sclerosis / idiopathic repeat miscarriage / AD protection']}, {'allele': '310C', 'position': 310, 'status': 'Reported', 'homoplasmy': '<NA>', 'heteroplasmy': '<NA>', 'locus': ['MT-CR'], 'diseases': ['Possible protective factor for normal tension glaucoma']}, {'allele': '3396C', 'position': 3396, 'status': 'Reported / Unclear', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND1'], 'diseases': ['NSHL / MIDD']}]