I0723

FASTA

Metadata

Reference

Data

identifier	I0723
alternative_identifiers	['T1', 'M229', 'UH']
country	Turkey
continent	Asia
region	Anatolia
culture	Anatolia_Neolithic
epoch	Neolithic
group	NENE
comment	-
latitude	40.2599983215332
longitude	29.649999618530273
sex	M
site	Mentese
site_detail	-
mt_hg	X2m2
ychr_hg	G2a2a1
year_from	-6400
year_to	-5600
date_detail	6400-5600 BCE
bp	-
c14_lab_code	-
c14_sample_tag	-
c14_layer_tag	-
avg_coverage	-
sequence_source	bam
reference	Mathieson et al. 2015. Genome-wide patterns of selection in 230 ancient Eurasians. Nature, 528(7583), 499-503. (link)
data_link	https://www.ebi.ac.uk/ena/data/view/PRJEB11450
ychr_snps	['G2a2:CTS4367:15615340C->G', 'G2a:F3088:20813445G->A', 'G2a:L31:14028148C->A', 'G2a:P15:23244026C->T', 'G2a:PF3141:23973594T->G', 'G2:CTS10089:19248446G->A', 'G2:F1239:8482393C->T', 'G2:F3344:22697266G->A', 'G2:F3536:23768744C->T', 'G2:M3579:21147058A->G', 'G2:P287:22072097G->T', 'G:CTS34:2681740G->A', 'G:CTS175:2785630A->T', 'G:CTS692:6955839A->G', 'G:CTS2251:14235140C->T', 'G:CTS4238:15504804C->T', 'G:CTS4761:15802681C->T', 'G:CTS5699:16439267G->A', 'G:CTS6957:17210745C->T', 'G:CTS7674:17610571G->A', 'G:CTS8531:18070349G->C', 'G:CTS9011:18615020A->T', 'G:CTS10945:22848965A->G', 'G:CTS13035:28783924C->A', 'G:F1131:8240725C->T', 'G:F1551:9448354A->G', 'G:L116:14989721C->G', 'G:L382:14469411C->A', 'G:L770:2863466A->T', 'G:M3450:6931141C->G', 'G:M3468:7744050T->C', 'G:M3472:7899682T->C', 'G:M3473:7927218C->T', 'G:M3480:8327892T->A', 'G:M3485:8563874C->T', 'G:M3597:21865624G->A', 'G:M3628:23793740C->A', 'G:P257:14432928G->A', 'G:PF2920:13824120T->G', 'G:PF3134:15275200C->G', 'G2a:F2301:16861108G->A', 'G2:CTS4413:15635425T->C', 'G2:F1189:8427005A->G', 'G2:F1647:9907842G->T', 'G2:M3465:7571775G->T', 'G2:M3488:8687693T->A', 'G2:Y380:28799209T->Chet', 'G:CTS373:6716150T->C', 'G:CTS2120:14188094G->T', 'G:CTS2125:14190447A->G', 'G:CTS2136:14195292A->G', 'G:CTS2517:14338503C->T', 'G:CTS4101:15397649A->G', 'G:CTS4523:15693336G->A', 'G:CTS4749:15797043A->G', 'G:CTS5640:16408569G->A', 'G:CTS6483:16929270C->T', 'G:CTS9894:19124322A->T', 'G:CTS10721:22729194C->T', 'G:CTS11294:23059496G->A', 'G:L605:18393536G->C', 'G:M3274:8865637G->A', 'G:M3464:7537950C->T', 'G:M3466:7614386G->A', 'G:M3471:7840218C->A', 'G:M3582:21334507G->T', 'G:M3585:21412501G->A', 'G:M3588:21495813T->C', 'G:Page94:2846401C->T', 'G:PF2956:14993358A->G', 'G:S1435:13658486C->G', 'G2a:CTS6753:17090976C->T', 'G:CTS1010:7143549C->T', 'G:CTS4479:15667235G->A', 'G:CTS5757:16469840A->G', 'G:CTS12654:28658660G->T', 'G:M3477:8121059G->A', 'G:M3595:21671839C->T', 'G2a2a:PF3147:7738069G->A', 'G2a2a:PF3159:14815695C->G', 'G2a2a:PF3184:22576860C->T', 'G:CTS827:7038432C->G', 'G2a2a:PF3175:18962113C->T', 'G2a2a:Z6178:7245721G->A', 'G2a:F1975:15588776A->C', 'G2a2a1:S15710:14254785T->G', 'G2a2a:PF3150:8476569T->C', 'G:CTS282:2871867A->G', 'G:CTS6073:16651032G->A', 'G:M3248:7565637G->A', 'G2a2a:PF3166:16735582T->G', 'G2:CTS1868:14103263G->A', 'G:CTS1997:14149320C->G', 'G:CTS2174:14207268T->C', 'G:CTS10280:19369881T->C', 'G:M3402:21790011C->T', 'G:M3478:8219021A->G']
mitopathos	[{'allele': '12705T', 'position': 12705, 'status': 'Reported', 'homoplasmy': '<NA>', 'heteroplasmy': '<NA>', 'locus': ['MT-CO1'], 'diseases': ['Possible protective factor for normal tension glaucoma']}, {'allele': '16189C', 'position': 16189, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CR'], 'diseases': ['Diabetes / Cardiomyopathy /cancer risk / mtDNA copy nbr / Metabolic Syndrome / Melanoma patients']}, {'allele': '195C', 'position': 195, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['BD-associated / melanoma pts']}, {'allele': '310C', 'position': 310, 'status': 'Reported', 'homoplasmy': '<NA>', 'heteroplasmy': '<NA>', 'locus': ['MT-CR'], 'diseases': ['Possible protective factor for normal tension glaucoma']}]