I0746

FASTA

Metadata

Reference

Data

identifier I0746
alternative_identifiers ['L11-322']
country Turkey
continent Asia
region Anatolia
culture Anatolia_Neolithic
epoch Neolithic
group NENE
comment -
latitude 40.29999923706055
longitude 29.56999969482422
sex M
site Barcın, Marmara Region, Northwest Anatolia
site_detail -
mt_hg K1a or K1a1
ychr_hg G2a2b2a1a1c
year_from -6067
year_to -5892
date_detail 6067-5892 calBCE (7110±50 BP, Poz-82177)
bp 7110±50
c14_lab_code Poz-82177
c14_sample_tag True
c14_layer_tag -
avg_coverage -
sequence_source bam
reference Mathieson et al. 2015. Genome-wide patterns of selection in 230 ancient Eurasians. Nature, 528(7583), 499-503. (link)
data_link https://www.ebi.ac.uk/ena/data/view/PRJEB11450
ychr_snps ['G2a2b2a:P303:21645348T->C', 'G2a2b2a:PF3329:8478026C->A', 'G2a2b2a:PF3342:21935606G->T', 'G2a2b2a:Z3243:21935550A->G', 'G2a2b:F2535:17589788C->T', 'G2a2b:F3139:21151007T->C', 'G2a2b:L32:14692227T->C', 'G2a2b:L190:18759690C->T', 'G2a2b:Z3260:13671506G->T', 'G2a2:CTS4367:15615340C->G', 'G2a:F2274:16802506G->T', 'G2a:F3088:20813445G->A', 'G2a:F4086:7727677C->T', 'G2a:L31:14028148C->A', 'G2a:M3393:21493984G->T', 'G2a:P15:23244026C->T', 'G2a:PF3141:23973594T->G', 'G2:CTS1900:14116322T->A', 'G2:CTS10089:19248446G->A', 'G2:F1239:8482393C->T', 'G2:F1294:8545324T->A', 'G2:F1393:8719593G->A', 'G2:F3198:21401188G->T', 'G2:F3220:21637589G->C', 'G2:F3344:22697266G->A', 'G2:F3536:23768744C->T', 'G2:L89:7978725C->T', 'G2:M3579:21147058A->G', 'G2:P287:22072097G->T', 'G:CTS34:2681740G->A', 'G:CTS692:6955839A->G', 'G:CTS1013:7145960C->T', 'G:CTS1283:7309873T->G', 'G:CTS2251:14235140C->T', 'G:CTS2271:14243137C->T', 'G:CTS2357:14273557C->T', 'G:CTS4238:15504804C->T', 'G:CTS4761:15802681C->T', 'G:CTS5699:16439267G->A', 'G:CTS7092:17281783G->A', 'G:CTS7269:17393643T->C', 'G:CTS7674:17610571G->A', 'G:CTS8023:17798903T->C', 'G:CTS8531:18070349G->C', 'G:CTS9011:18615020A->T', 'G:CTS9593:18979775T->A', 'G:CTS10026:19215139A->T', 'G:CTS10723:22730922C->G', 'G:CTS11228:23023554C->A', 'G:CTS11331:23074190A->G', 'G:CTS11529:23151673T->C', 'G:CTS11911:23346582A->C', 'G:CTS13035:28783924C->A', 'G:F1131:8240725C->T', 'G:F1383:8700380C->T', 'G:F1551:9448354A->G', 'G:F2076:16185081A->G', 'G:F2906:18957208C->T', 'G:L116:14989721C->G', 'G:L382:14469411C->A', 'G:L522:17533325A->C', 'G:L770:2863466A->T', 'G:L837:17853245A->G', 'G:M3258:7992031T->C', 'G:M3450:6931141C->G', 'G:M3468:7744050T->C', 'G:M3473:7927218C->T', 'G:M3474:7930724C->A', 'G:M3479:8231862G->C', 'G:M3480:8327892T->A', 'G:M3482:8454233G->A', 'G:M3485:8563874C->T', 'G:M3486:8600158A->T', 'G:M3593:21648433C->G', 'G:M3597:21865624G->A', 'G:M3599:21939157G->A', 'G:M3604:22167631C->T', 'G:M3609:22651339C->T', 'G:M3628:23793740C->A', 'G:P257:14432928G->A', 'G:PF2918:13679469G->A', 'G:PF2920:13824120T->G', 'G:PF2952:14577177G->A', 'G:PF3045:20823823C->T', 'G:PF3134:15275200C->G', 'G:U21:15204710A->C', 'G:Z6325:13806058C->T', 'G2a2b2a1a1c:CTS342:6700171G->T', 'G2a2b2a1a1:PF3345:23640536G->T', 'G2a2b2a1a:PF3346:24498136T->C', 'G2a2b2a1:CTS12570:28617051C->T', 'G2a2b2a1:PF3331:9146638A->C', 'G2a2b2a1:PF3337:18023391G->T', 'G2a2b2a1:Y287:9381065G->T', 'G2a2b2a:CTS424:6744902C->T', 'G2a2b2a:CTS946:7100848A->G', 'G2a2b2a:CTS10725:22732609C->G', 'G2a2b2a:PF3332:10026953A->T', 'G2a2b:CTS90:2724421G->A', 'G2a2b:CTS1093:7195781C->T', 'G2a2b:CTS9763:19060222T->Ghet', 'G2a2b:CTS10006:19205722C->T', 'G2a2b:CTS10449:19461366C->A', 'G2a2b:F2184:16512478G->A', 'G2a2b:L30:15604899C->T', 'G2a2b:M3412:22553146G->A', 'G2a:CTS5416:16262350C->T', 'G2a:CTS6314:16816772G->A', 'G2a:F2301:16861108G->A', 'G2a:Z3240:10060449A->G', 'G2:CTS4264:15528792T->C', 'G2:CTS4413:15635425T->C', 'G2:CTS4703:15776024C->T', 'G2:CTS6316:16817402C->T', 'G2:CTS6742:17088129G->C', 'G2:CTS9885:19119067C->T', 'G2:CTS11016:22899857A->G', 'G2:F1189:8427005A->G', 'G2:F1647:9907842G->T', 'G2:F2319:16903051A->T', 'G2:F3226:21663882C->A', 'G2:L156:17174741A->T', 'G2:M3465:7571775G->T', 'G2:M3469:7823146G->T', 'G2:M3488:8687693T->A', 'G2:M3493:9443697G->A', 'G2:PF2909:13205148A->G', 'G2:PF3119:23739606G->T', 'G2:Y380:28799209T->Chet', 'G:CTS373:6716150T->C', 'G:CTS995:7132348G->C', 'G:CTS1612:13987230A->G', 'G:CTS2016.1:14155765G->A', 'G:CTS2120:14188094G->T', 'G:CTS2125:14190447A->G', 'G:CTS2136:14195292A->G', 'G:CTS2215:14220356G->A', 'G:CTS2517:14338503C->T', 'G:CTS4101:15397649A->G', 'G:CTS4479:15667235G->Ahet', 'G:CTS4523:15693336G->A', 'G:CTS4749:15797043A->G', 'G:CTS5317:16203361G->C', 'G:CTS5414:16261165C->T', 'G:CTS5504:16325291T->C', 'G:CTS5640:16408569G->A', 'G:CTS6483:16929270C->T', 'G:CTS9710:19033112G->A', 'G:CTS9894:19124322A->T', 'G:CTS10721:22729194C->T', 'G:CTS11294:23059496G->A', 'G:CTS11907:23343857C->G', 'G:L154:8614138T->G', 'G:L402:15204708T->G', 'G:L605:18393536G->C', 'G:L836:16896148G->A', 'G:M201:15027529G->T', 'G:M3264:8318375G->T', 'G:M3266:8422993T->A', 'G:M3274:8865637G->A', 'G:M3464:7537950C->T', 'G:M3466:7614386G->A', 'G:M3470:7830068T->C', 'G:M3471:7840218C->A', 'G:M3481:8387539G->A', 'G:M3580:21162869C->G', 'G:M3582:21334507G->T', 'G:M3585:21412501G->A', 'G:M3586:21447363A->G', 'G:M3588:21495813T->C', 'G:M3600:21954611G->A', 'G:M3627:23782951G->A', 'G:Page94:2846401C->T', 'G:PF2836:6478903G->A', 'G:PF2956:14993358A->G', 'G:PF2958:15086183G->C', 'G:S1435:13658486C->G', 'G:U12:14639427A->C']
mitopathos [{'allele': '10398G', 'position': 10398, 'status': 'Reported / lineage L & M marker / also hg IJK', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND3'], 'diseases': ['PD protective factor / longevity / altered cell pH / metabolic syndrome / breast cancer risk / Leigh Syndrome risk / ADHD / cognitive decline / SCA2 age of onset / Fuchs endothelial corneal dystrophy']}, {'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '16093C', 'position': 16093, 'status': 'Reported', 'homoplasmy': '-', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['Cyclic Vomiting Syndrome']}, {'allele': '9055A', 'position': 9055, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ATP6'], 'diseases': ['PD protective factor']}]