I0840

FASTA

Metadata

Reference

Data

identifier I0840
alternative_identifiers ['AMD2-G18-187']
country Portugal
continent Europe
region Iberia
culture Bell Beaker
epoch Copper Age
group BBC
comment -
latitude 39.5
longitude -8.616666793823242
sex F
site Galeria da Cisterna, Almonda
site_detail -
mt_hg U5b1i
ychr_hg -
year_from -2455
year_to -2200
date_detail 2455-2200 calBCE (3836±29 BP, OxA-28857)
bp 3836±29
c14_lab_code OxA-28857
c14_sample_tag True
c14_layer_tag -
avg_coverage 6.9581098556518555
sequence_source bam
reference Olalde et al. 2018. The Beaker phenomenon and the genomic transformation of northwest Europe. Nature, 555(7695), 190-196. (link)
data_link http://www.ebi.ac.uk/ena/data/view/PRJEB23635
ychr_snps -
mitopathos [{'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '16270T', 'position': 16270, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-CR'], 'diseases': ['Melanoma patients']}]