I1097

FASTA

Metadata

Reference

Data

identifier I1097
alternative_identifiers ['BAR271', 'M10-271']
country Turkey
continent Asia
region Anatolia
culture Anatolia_Neolithic
epoch Neolithic
group NENE
comment -
latitude 40.29999923706055
longitude 29.56999969482422
sex M
site Barc─▒n, Marmara Region, Northwest Anatolia
site_detail -
mt_hg W1-T119C
ychr_hg G2a2b2a3
year_from -6500
year_to -6200
date_detail 6500-6200 BCE
bp -
c14_lab_code -
c14_sample_tag -
c14_layer_tag -
avg_coverage -
sequence_source bam
reference Mathieson et al. 2015. Genome-wide patterns of selection in 230 ancient Eurasians. Nature, 528(7583), 499-503. (link)
data_link https://www.ebi.ac.uk/ena/data/view/PRJEB11450
ychr_snps ['G2a2b2a:CTS4454^:15655268C->T', 'G2a2b2a:CTS10366:19423576G->A', 'G2a2b2a:PF3329:8478026C->A', 'G2a2b2a:PF3342:21935606G->T', 'G2a2b2a:Z3243:21935550A->G', 'G2a2b2:CTS9957:19170699C->T', 'G2a2b:F2535:17589788C->T', 'G2a2b:F3139:21151007T->C', 'G2a2b:L32:14692227T->C', 'G2a2b:L190:18759690C->T', 'G2a2:CTS4367:15615340C->G', 'G2a:CTS6630:17022002C->T', 'G2a:F2274:16802506G->T', 'G2a:F3088:20813445G->A', 'G2a:F4086:7727677C->T', 'G2a:M3397:21605685G->C', 'G2a:P15:23244026C->T', 'G2a:PF3141:23973594T->G', 'G2:CTS1900:14116322T->A', 'G2:CTS10089:19248446G->A', 'G2:F1239:8482393C->T', 'G2:F1393:8719593G->A', 'G2:F3198:21401188G->T', 'G2:F3220:21637589G->C', 'G2:F3344:22697266G->A', 'G2:F3536:23768744C->T', 'G2:L89:7978725C->T', 'G:CTS34:2681740G->A', 'G:CTS175:2785630A->T', 'G:CTS1283:7309873T->G', 'G:CTS2271:14243137C->T', 'G:CTS2357:14273557C->T', 'G:CTS2506:14333087C->A', 'G:CTS4238:15504804C->T', 'G:CTS4761:15802681C->T', 'G:CTS6957:17210745C->T', 'G:CTS7092:17281783G->A', 'G:CTS7269:17393643T->C', 'G:CTS7674:17610571G->A', 'G:CTS8023:17798903T->C', 'G:CTS9011:18615020A->T', 'G:CTS10026:19215139A->T', 'G:CTS11228:23023554C->A', 'G:CTS11529:23151673T->C', 'G:CTS13035:28783924C->A', 'G:F1131:8240725C->T', 'G:F1383:8700380C->T', 'G:L116:14989721C->G', 'G:L382:14469411C->A', 'G:L522:17533325A->C', 'G:M3450:6931141C->G', 'G:M3468:7744050T->C', 'G:M3473:7927218C->T', 'G:M3474:7930724C->A', 'G:M3479:8231862G->C', 'G:M3480:8327892T->A', 'G:M3485:8563874C->T', 'G:M3486:8600158A->T', 'G:M3597:21865624G->A', 'G:M3599:21939157G->A', 'G:M3604:22167631C->T', 'G:M3628:23793740C->A', 'G:P257:14432928G->A', 'G:PF3045:20823823C->T', 'G:PF3134:15275200C->G', 'G:U21:15204710A->C', 'G:Z3262:13676268G->A', 'G2a2b2a:CTS946:7100848A->G', 'G2a2b:CTS10006:19205722C->T', 'G2a2b:M3412:22553146G->A', 'G2:CTS4413:15635425T->C', 'G2:CTS4703:15776024C->T', 'G2:CTS9885:19119067C->T', 'G2:CTS11016:22899857A->G', 'G2:F1189:8427005A->G', 'G2:F1647:9907842G->T', 'G2:F3226:21663882C->A', 'G2:M3465:7571775G->T', 'G2:PF2909:13205148A->G', 'G2:PF3119:23739606G->T', 'G:CTS995:7132348G->C', 'G:CTS1612:13987230A->G', 'G:CTS2125:14190447A->G', 'G:CTS2215:14220356G->A', 'G:CTS2517:14338503C->T', 'G:CTS4101:15397649A->G', 'G:CTS4523:15693336G->A', 'G:CTS4749:15797043A->G', 'G:CTS5504:16325291T->C', 'G:CTS5640:16408569G->A', 'G:CTS6483:16929270C->T', 'G:CTS9710:19033112G->A', 'G:CTS9894:19124322A->T', 'G:CTS10721:22729194C->T', 'G:CTS11907:23343857C->G', 'G:L154:8614138T->G', 'G:L402:15204708T->G', 'G:M3266:8422993T->A', 'G:M3464:7537950C->T', 'G:M3470:7830068T->C', 'G:M3471:7840218C->A', 'G:M3580:21162869C->G', 'G:M3582:21334507G->T', 'G:M3585:21412501G->A', 'G:M3586:21447363A->G', 'G:S1435:13658486C->G', 'G2a2b2a3:Z39318:8591817A->G', 'G2a2b:CTS1180:7256000A->G', 'G2a2b:Z3238:10007773G->A', 'G2a:CTS6026:16620480C->T', 'G2a:CTS6753:17090976C->T', 'G2a:F1980:15660640C->T', 'G2:CTS4242:15507383T->C', 'G2:CTS5666:16424034C->T', 'G:CTS1010:7143549C->T', 'G:CTS4479:15667235G->A', 'G:CTS5757:16469840A->G', 'G:CTS6936:17201846C->T', 'G:CTS9707:19030998C->A', 'G:CTS10706:22714204G->T', 'G:CTS11400:23095144A->G', 'G:CTS12654:28658660G->T', 'G:M3477:8121059G->A', 'G:M3487:8602816G->C', 'G:M3595:21671839C->T']
mitopathos [{'allele': '12705T', 'position': 12705, 'status': 'Reported', 'homoplasmy': '<NA>', 'heteroplasmy': '<NA>', 'locus': ['MT-CO1'], 'diseases': ['Possible protective factor for normal tension glaucoma']}, {'allele': '195C', 'position': 195, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['BD-associated / melanoma pts']}, {'allele': '310C', 'position': 310, 'status': 'Reported', 'homoplasmy': '<NA>', 'heteroplasmy': '<NA>', 'locus': ['MT-CR'], 'diseases': ['Possible protective factor for normal tension glaucoma']}, {'allele': '5460A', 'position': 5460, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-ND2'], 'diseases': ['AD / PD / LHON']}]