I1099

FASTA

Metadata

Reference

Data

identifier	I1099
alternative_identifiers	['L11-S-488']
country	Turkey
continent	Asia
region	Anatolia
culture	Anatolia_Neolithic
epoch	Neolithic
group	NENE
comment	-
latitude	40.29999923706055
longitude	29.56999969482422
sex	M
site	Barcın, Marmara Region, Northwest Anatolia
site_detail	-
mt_hg	T2b
ychr_hg	G2a2a1a2a
year_from	-6500
year_to	-6200
date_detail	6500-6200 BCE
bp	-
c14_lab_code	-
c14_sample_tag	-
c14_layer_tag	-
avg_coverage	-
sequence_source	bam
reference	Mathieson et al. 2015. Genome-wide patterns of selection in 230 ancient Eurasians. Nature, 528(7583), 499-503. (link)
data_link	https://www.ebi.ac.uk/ena/data/view/PRJEB11450
ychr_snps	['G2a:F2529:17571517A->G', 'G2a:PF3141:23973594T->G', 'G2:CTS7662:17597715C->T', 'G2:F3220:21637589G->C', 'G2:F3536:23768744C->T', 'G2:L89:7978725C->T', 'G2:M3579:21147058A->G', 'G:CTS2271:14243137C->T', 'G:CTS2357:14273557C->T', 'G:CTS4887:15888550C->T', 'G:CTS7092:17281783G->A', 'G:CTS7269:17393643T->C', 'G:CTS8023:17798903T->C', 'G:CTS10026:19215139A->T', 'G:CTS10723:22730922C->G', 'G:CTS11185:22997377C->G', 'G:CTS11228:23023554C->A', 'G:CTS11529:23151673T->C', 'G:CTS13035:28783924C->A', 'G:F1383:8700380C->T', 'G:F1551:9448354A->G', 'G:L116:14989721C->G', 'G:L382:14469411C->A', 'G:L522:17533325A->C', 'G:M3450:6931141C->G', 'G:M3468:7744050T->C', 'G:M3473:7927218C->T', 'G:M3474:7930724C->A', 'G:M3479:8231862G->C', 'G:M3485:8563874C->T', 'G:M3486:8600158A->T', 'G:M3599:21939157G->A', 'G:M3628:23793740C->A', 'G:P257:14432928G->A', 'G:PF3045:20823823C->T', 'G:PF3134:15275200C->G', 'G:S1435:13658486C->Ghet', 'G:CTS2517:14338503C->T', 'G:CTS4101:15397649A->G', 'G:CTS4749:15797043A->G', 'G:CTS5640:16408569G->A', 'G:CTS9894:19124322A->T', 'G:M3264:8318375G->T', 'G:M3466:7614386G->A', 'G:M3471:7840218C->A', 'G:M3481:8387539G->A', 'G:M3580:21162869C->G', 'G:M3585:21412501G->A', 'G:M3586:21447363A->G', 'G:PF2956:14993358A->G', 'G2:CTS4242:15507383T->C', 'G:CTS1010:7143549C->T', 'G:CTS4479:15667235G->A', 'G:CTS10706:22714204G->T', 'G:CTS12654:28658660G->T', 'G2a2a1a2a:PF3237:17017831G->A', 'G2a2a1a2a:PF3238:17256431G->A', 'G2a2a1a2:L91:21645555G->C', 'G2a2a1:PF3170:18090604G->A', 'G2a2a:PF3147:7738069G->A', 'G2a2a:PF3159:14815695C->G', 'G2a2a:PF3168:17572142T->C', 'G2a2a:PF3181:21808944C->A', 'G2a2a:PF3184:22576860C->T', 'G2a2a:PF3185:22894488C->T', 'G2:PF3125:24485469C->T', 'G:CTS827:7038432C->G', 'G:CTS5837:16499780T->A']
mitopathos	[{'allele': '11251G', 'position': 11251, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-ND4'], 'diseases': ['Reduced risk of PD']}, {'allele': '15928A', 'position': 15928, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-TT'], 'diseases': ['Multiple Sclerosis / idiopathic repeat miscarriage / AD protection']}, {'allele': '310C', 'position': 310, 'status': 'Reported', 'homoplasmy': '<NA>', 'heteroplasmy': '<NA>', 'locus': ['MT-CR'], 'diseases': ['Possible protective factor for normal tension glaucoma']}, {'allele': '4917G', 'position': 4917, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND2'], 'diseases': ['LHON / Insulin Resistance / AMD / NRTI-PN']}]