I1101

FASTA

Metadata

Reference

Data

identifier	I1101
alternative_identifiers	['M11-352a']
country	Turkey
continent	Asia
region	Anatolia
culture	Anatolia_Neolithic
epoch	Neolithic
group	NENE
comment	-
latitude	40.29999923706055
longitude	29.56999969482422
sex	M
site	Barcın, Marmara Region, Northwest Anatolia
site_detail	-
mt_hg	T2b
ychr_hg	H2
year_from	-6500
year_to	-6200
date_detail	6500-6200 BCE
bp	-
c14_lab_code	-
c14_sample_tag	-
c14_layer_tag	-
avg_coverage	-
sequence_source	bam
reference	Mathieson et al. 2015. Genome-wide patterns of selection in 230 ancient Eurasians. Nature, 528(7583), 499-503. (link)
data_link	https://www.ebi.ac.uk/ena/data/view/PRJEB11450
ychr_snps	['H2:L279:6932824G->T', 'H2:L285:21869856C->T', 'H:M2713:6855809G->A', 'H:M2896:16919982C->T', 'H:M2955:18182848G->T', 'H:M2992:19535440A->T', 'H:M3058:22951796G->A', 'H:M3070:23153863T->A', 'H:M2942:17887908A->G']
mitopathos	[{'allele': '11251G', 'position': 11251, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-ND4'], 'diseases': ['Reduced risk of PD']}, {'allele': '15928A', 'position': 15928, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-TT'], 'diseases': ['Multiple Sclerosis / idiopathic repeat miscarriage / AD protection']}, {'allele': '310C', 'position': 310, 'status': 'Reported', 'homoplasmy': '<NA>', 'heteroplasmy': '<NA>', 'locus': ['MT-CR'], 'diseases': ['Possible protective factor for normal tension glaucoma']}, {'allele': '4216C', 'position': 4216, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND1'], 'diseases': ['LHON / Insulin Resistance /possible adaptive high altitude variant / miscarriage']}, {'allele': '4917G', 'position': 4917, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND2'], 'diseases': ['LHON / Insulin Resistance / AMD / NRTI-PN']}]