I1103

FASTA

Metadata

Reference

Data

identifier I1103
alternative_identifiers ['M11-S-350']
country Turkey
continent Asia
region Anatolia
culture Anatolia_Neolithic
epoch Neolithic
group NENE
comment -
latitude 40.29999923706055
longitude 29.56999969482422
sex M
site Barc─▒n, Marmara Region, Northwest Anatolia
site_detail -
mt_hg K1b1b1
ychr_hg G2a2a1a2a
year_from -6500
year_to -6200
date_detail 6500-6200 BCE
bp -
c14_lab_code -
c14_sample_tag -
c14_layer_tag -
avg_coverage -
sequence_source bam
reference Mathieson et al. 2015. Genome-wide patterns of selection in 230 ancient Eurasians. Nature, 528(7583), 499-503. (link)
data_link https://www.ebi.ac.uk/ena/data/view/PRJEB11450
ychr_snps ['G2a:F2274:16802506G->T', 'G2a:F2529:17571517A->G', 'G2a:L31:14028148C->A', 'G2a:P15:23244026C->T', 'G2a:PF3141:23973594T->G', 'G2:CTS1900:14116322T->A', 'G2:CTS7662:17597715C->T', 'G2:F1294:8545324T->A', 'G2:F1393:8719593G->A', 'G2:F3344:22697266G->A', 'G2:F3536:23768744C->T', 'G2:P287:22072097G->T', 'G:CTS1283:7309873T->G', 'G:CTS2271:14243137C->T', 'G:CTS2357:14273557C->T', 'G:CTS4238:15504804C->T', 'G:CTS4761:15802681C->T', 'G:CTS7674:17610571G->A', 'G:CTS8023:17798903T->C', 'G:CTS11228:23023554C->A', 'G:CTS11911:23346582A->C', 'G:CTS13035:28783924C->A', 'G:F1383:8700380C->T', 'G:L522:17533325A->C', 'G:L770:2863466A->T', 'G:M3258:7992031T->C', 'G:M3450:6931141C->G', 'G:M3468:7744050T->C', 'G:M3472:7899682T->C', 'G:M3474:7930724C->A', 'G:M3479:8231862G->C', 'G:M3480:8327892T->A', 'G:M3482:8454233G->A', 'G:M3485:8563874C->T', 'G:M3599:21939157G->A', 'G:M3628:23793740C->A', 'G:PF2918:13679469G->A', 'G:PF3134:15275200C->G', 'G:U21:15204710A->C', 'G:Z3262:13676268G->A', 'G:Z6325:13806058C->T', 'G2:CTS4413:15635425T->C', 'G2:CTS6316:16817402C->T', 'G2:CTS11016:22899857A->G', 'G2:F1189:8427005A->G', 'G2:F1647:9907842G->T', 'G2:M3465:7571775G->T', 'G2:PF3119:23739606G->T', 'G2:Y380:28799209T->Chet', 'G:CTS1612:13987230A->G', 'G:CTS2120:14188094G->T', 'G:CTS2125:14190447A->G', 'G:CTS2136:14195292A->G', 'G:CTS4101:15397649A->G', 'G:CTS4523:15693336G->A', 'G:CTS4749:15797043A->G', 'G:CTS5317:16203361G->C', 'G:CTS5504:16325291T->C', 'G:CTS5640:16408569G->A', 'G:CTS9894:19124322A->T', 'G:CTS11294:23059496G->A', 'G:L154:8614138T->G', 'G:L402:15204708T->G', 'G:M201:15027529G->T', 'G:M3266:8422993T->A', 'G:M3466:7614386G->A', 'G:M3471:7840218C->A', 'G:M3580:21162869C->G', 'G:S1435:13658486C->G', 'G:CTS1010:7143549C->T', 'G:CTS4479:15667235G->A', 'G:CTS12654:28658660G->T', 'G:M3595:21671839C->T', 'G2a2a1a2a:PF3237:17017831G->A', 'G2a2a1a2a:PF3238:17256431G->A', 'G2a2a1a2:L91:21645555G->C', 'G2a2a1:PF3170:18090604G->A', 'G2a2a:PF3159:14815695C->G', 'G2a2a:PF3181:21808944C->A', 'G2a2a:PF3185:22894488C->T', 'G:CTS827:7038432C->G', 'G2a2a1a2:PF3233:8895958T->C', 'G2a2a1:PF3155:14006343T->C', 'G2a2a1:PF3160:14926732C->T', 'G2a2a1:S11769:8648696C->T', 'G2a2a:PF3149:7943188A->G', 'G2a2a:PF3175:18962113C->T', 'G2a2a:Z6178:7245721G->A', 'G2a:F1975:15588776A->C', 'G:S8863:4179056G->A']
mitopathos [{'allele': '10398G', 'position': 10398, 'status': 'Reported / lineage L & M marker / also hg IJK', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND3'], 'diseases': ['PD protective factor / longevity / altered cell pH / metabolic syndrome / breast cancer risk / Leigh Syndrome risk / ADHD / cognitive decline / SCA2 age of onset / Fuchs endothelial corneal dystrophy']}, {'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '14063C', 'position': 14063, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Potentially functional variant cosegregating with LHON3635A']}, {'allele': '16093C', 'position': 16093, 'status': 'Reported', 'homoplasmy': '-', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['Cyclic Vomiting Syndrome']}, {'allele': '310C', 'position': 310, 'status': 'Reported', 'homoplasmy': '<NA>', 'heteroplasmy': '<NA>', 'locus': ['MT-CR'], 'diseases': ['Possible protective factor for normal tension glaucoma']}, {'allele': '5913A', 'position': 5913, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CO1'], 'diseases': ['Prostate Cancer / hypertension']}, {'allele': '9055A', 'position': 9055, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ATP6'], 'diseases': ['PD protective factor']}]