I1187

FASTA

Metadata

Reference

Data

identifier	I1187
alternative_identifiers	-
country	Israel
continent	Asia
region	Near East
culture	Levant_ChL
epoch	Copper Age
group	CANE
comment	Chalcolithic
latitude	32.977108001708984
longitude	35.337562561035156
sex	M
site	Peqi'in Cave
site_detail	-
mt_hg	U6d
ychr_hg	T
year_from	-4500
year_to	-3900
date_detail	4500–3900 BCE
bp	-
c14_lab_code	-
c14_sample_tag	-
c14_layer_tag	-
avg_coverage	0.11999999731779099
sequence_source	<NA>
reference	Harney et al. 2018. Ancient DNA from Chalcolithic Israel reveals the role of population mixture in cultural transformation. Nature Communications, 9(1), ?. (link)
data_link	https://www.ebi.ac.uk/ena/data/view/SAMEA4843651
ychr_snps	-
mitopathos	[{'allele': '12705T', 'position': 12705, 'status': 'Reported', 'homoplasmy': '<NA>', 'heteroplasmy': '<NA>', 'locus': ['MT-CO1'], 'diseases': ['Possible protective factor for normal tension glaucoma']}, {'allele': '14696G', 'position': 14696, 'status': 'Reported', 'homoplasmy': '-', 'heteroplasmy': '+', 'locus': ['MT-TE'], 'diseases': ['Progressive Encephalopathy']}, {'allele': '15784C', 'position': 15784, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CYB'], 'diseases': ['POAG - potential for association']}, {'allele': '16390A', 'position': 16390, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CR'], 'diseases': ['POAG - potential for association']}, {'allele': '3316A', 'position': 3316, 'status': 'Unclear', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND1'], 'diseases': ['Diabetes / LHON / PEO']}, {'allele': '8836G', 'position': 8836, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ATP6'], 'diseases': ['LHON']}]