I1277

FASTA

Metadata

Reference

Data

identifier	I1277
alternative_identifiers	['MIR14', 'inv. 6462/23']
country	Spain
continent	Europe
region	Iberia
culture	Iberia_Chalcolithic
epoch	Copper Age
group	CAIB
comment	-
latitude	42.33000183105469
longitude	-3.5
sex	M
site	El Mirador Cave, Atapuerca, Burgos
site_detail	-
mt_hg	H3
ychr_hg	I2a2a2a
year_from	-2568
year_to	-2346
date_detail	2568-2346 calBCE (3950±30 BP, Beta-416457)
bp	3950±30
c14_lab_code	Beta-416457
c14_sample_tag	True
c14_layer_tag	-
avg_coverage	519.0
sequence_source	bam
reference	Mathieson et al. 2015. Genome-wide patterns of selection in 230 ancient Eurasians. Nature, 528(7583), 499-503. (link)
data_link	https://www.ebi.ac.uk/ena/data/view/PRJEB11450
ychr_snps	['I:CTS4088:15389836T->C', 'I:CTS4209:15479899T->A', 'I:CTS5764:16471254A->G', 'I:CTS6265:16780748C->G', 'I:CTS7831:17692855T->A', 'I:CTS8420:18018313C->A', 'I:CTS8963:18582617C->T', 'I:FGC2412:21689728A->G', 'I:FGC2413:8262092C->T', 'I:FGC2415:13835003T->C', 'I:FI2:8382265C->G', 'I:L578:8267857G->A', 'I:L758:8536868C->G', 'I:L846:7856500C->T', 'I:PF3641:7688470T->C', 'I:PF3661:8484606C->A', 'I:PF3833:22485425A->T', 'I:Z16987:22243817A->Ghet', 'I:CTS6231:16751000C->T', 'I:CTS5946:16567253A->G', 'I:CTS8876:18257568G->A', 'I:PF3836:22525421T->G', 'I2:L68:18700150C->T', 'I:CTS646:6926038T->A', 'I:CTS7593:17548890G->A', 'I:CTS8333:17940414G->A', 'I:FI3:8485677C->A', 'I:PF3837:22573702G->A', 'I:L755:8465165C->T', 'I2a2:L35:22725379C->A', 'I2a2:L368:6931594C->T', 'I:PF3803:21452125A->G', 'I2a2a:P221:8353707C->A', 'I2a2:L181:19077754G->T', 'I2a2a2a:L1228:15446045G->C', 'I2a2a2:S9403:6742730T->C', 'I2a2a2:Y6098:9647453C->T', 'I:PF3640:7681156T->Ahet', 'I:PF3665:8643763A->Ghet', 'I2a1:PF4004:14491684T->C;I2:PF3664:8567995G->A;I:CTS10058:19233673A->G;I:CTS10941:22845794A->G;I:CTS11979:23401471C->T;I:CTS1800:14073053G->A;I:CTS2193:14214481G->T;I:CTS2387:14286853T->C;I:CTS2514:14337364T->C;I:CTS2536:14352669G->A;I:CTS3517:14986989T->G;I:CTS4088:15389836T->C;I:CTS4209:15479899T->A;I:CTS4848:15862842C->T;I:CTS5946:16567253A->G;I:CTS6231:16751000C->T;I:CTS6265:16780748C->G;I:CTS646:6926038T->A;I:CTS6497:16939794A->T;I:CTS6751:17090238C->G;I:CTS7329:17424807C->T;I:CTS7469:17497181C->A;I:CTS7502:17511797A->G;I:CTS7540:17525137A->G;I:CTS7593:17548890G->A;I:CTS7831:17692855T->A;I:CTS8333:17940414G->A;I:CTS8420:18018313C->A;I:CTS88:2723755G->A;I:CTS8963:18582617C->T;I:CTS9860:19104986G->A;I:FGC2412:21689728A->G;I:FGC2413:8262092C->T;I:FGC2415:13835003T->C;I:FGC2416:7642823G->T;I:FI2:8382265C->G;I:FI3:8485677C->A;I:FI4:8873160G->T;I:L1197:14974451C->T;I:L41:19048602G->A;I:L503:21359407C->G;I:L578:8267857G->A;I:L755:8465165C->T;I:L758:8536868C->G;I:L772:15615533C->A;I:P38:14484379A->C;I:PF3640:7681156T->A;I:PF3641:7688470T->C;I:PF3660:8466652G->A;I:PF3661:8484606C->A;I:PF3665:8643763A->G;I:PF3742:16354708G->A;I:PF3794:21067903C->T;I:PF3797:21130059A->G;I:PF3800:21402723A->G;I:PF3803:21452125A->G;I:PF3817:21939618G->A;I:PF3837:22573702G->A;I:Z16985:13804066G->C']
mitopathos	-