I1300

FASTA

Metadata

Reference

Data

identifier I1300
alternative_identifiers ['MIR22', 'inv. 6462/25']
country Spain
continent Europe
region Iberia
culture Iberia_Chalcolithic
epoch Copper Age
group CAIB
comment -
latitude 42.33000183105469
longitude -3.5
sex F
site El Mirador Cave, Atapuerca, Burgos
site_detail -
mt_hg K1a2a
ychr_hg -
year_from -3363
year_to -1903
date_detail 3363-1903 BCE [other dates used in the Bayesian modeling analysis we used to obtain this range are (3950±30 BP, Beta-416457), 2857-2496 calBCE (4080±30 BP, Beta-416456), 2865-2575 calBCE (4110±30 BP, Beta-416458), 2900-2679 calBCE (4210±30 BP, Beta-416455), based on dates of other El Mirador samples)
bp -
c14_lab_code -
c14_sample_tag -
c14_layer_tag True
avg_coverage 726.0
sequence_source bam
reference Mathieson et al. 2015. Genome-wide patterns of selection in 230 ancient Eurasians. Nature, 528(7583), 499-503. (link)
data_link https://www.ebi.ac.uk/ena/data/view/PRJEB11450
ychr_snps ['R1a:L145:14138745C->A;R1a:L146:23473201T->A;R1a:L62:17891241A->G;R1a:L63:18162834T->C;R1:CTS2565:14366723C->T;R1:CTS3123:14674176A->C;R1:CTS3321:14829196C->T;R1:CTS5611:16394489T->G;R1:CTS997:7132713G->A;R1:L875:16742224A->G;R1:P231:9989615A->G;R1:P233:21166358T->G;R1:P236:17782178C->G;R1:P294:7570822G->C;R:CTS207:2810583A->G;R:CTS3622:15078469C->G;R:CTS6417:16882568T->C;R:CTS7880:17723850C->T;R:CTS8311:17930099C->A;R:F154:8558505T->C;R:F33:6701239G->A;R:F459:18017528G->T;R:F63:7177189G->A;R:F652:23631629C->A;R:F82:7548900G->A;R:FGC1168:15667208G->C;R:L1225:22733758C->G;R:L1347:22818334C->T;R:M651:9889199G->A;R:M718:17334694G->T;R:M734:18066156C->T;R:M760:21219443A->G;R:P227:21409706G->C']
mitopathos -