I1378

FASTA

Metadata

Reference

Data

identifier	I1378
alternative_identifiers	['StPet2']
country	Ukraine
continent	Europe
region	Pontic steppe
culture	Ukraine_Neolithic
epoch	Neolithic
group	NEUk
comment	son_of_I1732
latitude	48.29999923706055
longitude	35.13999938964844
sex	M
site	Vovnigi
site_detail	-
mt_hg	U4b
ychr_hg	I2a2a1b1
year_from	-4519
year_to	-4343
date_detail	4519-4343 calBCE (5590±50 BP Poz-83446)
bp	5590±50
c14_lab_code	Poz-83446
c14_sample_tag	True
c14_layer_tag	-
avg_coverage	-
sequence_source	bam
reference	Jones et al. 2017. The Neolithic Transition in the Baltic Was Not Driven by Admixture with Early European Farmers. Current Biology, 27(4), 576-582. (link)
data_link	https://www.ebi.ac.uk/ena/data/view/PRJEB18067
ychr_snps	['I:FGC2412:21689728A->G', 'I:L1197:14974451C->T', 'I:PF3661:8484606C->A', 'I:PF3794:21067903C->T', 'I:PF3800:21402723A->G', 'I2a2a1b1:L702:7629205C->T', 'I2a2a:P221:8353707C->A', 'I2a2a1b:CTS10057:19232160C->T']
mitopathos	[{'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '15693C', 'position': 15693, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CYB'], 'diseases': ['Possibly LVNC cardiomyopathy-associated']}, {'allele': '195C', 'position': 195, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['BD-associated / melanoma pts']}, {'allele': '499A', 'position': 499, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CR'], 'diseases': ['Endometriosis']}]

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