I1390

FASTA

Metadata

Reference

Data

identifier	I1390
alternative_identifiers	['11-Grave68']
country	France
continent	Europe
region	western Europe
culture	Bell Beaker
epoch	Copper Age
group	BBC
comment	-
latitude	47.650001525878906
longitude	7.449999809265137
sex	M
site	Sierentz, Les Villas d'Aurele, Haut-Rhin
site_detail	-
mt_hg	X2b4a
ychr_hg	R1b1a1a2a1a2
year_from	-2480
year_to	-2210
date_detail	2480-2210 calBCE [2480-2288 calBCE (3910±35 BP, Poz-41227), 2467-2210 calBCE (3875±35 BP, Poz-41226)]
bp	3910±35
c14_lab_code	Poz-41227
c14_sample_tag	True
c14_layer_tag	-
avg_coverage	177.8679962158203
sequence_source	bam
reference	Olalde et al. 2018. The Beaker phenomenon and the genomic transformation of northwest Europe. Nature, 555(7695), 190-196. (link)
data_link	http://www.ebi.ac.uk/ena/data/view/PRJEB23635
ychr_snps	-
mitopathos	[{'allele': '12705T', 'position': 12705, 'status': 'Reported', 'homoplasmy': '<NA>', 'heteroplasmy': '<NA>', 'locus': ['MT-CO1'], 'diseases': ['Possible protective factor for normal tension glaucoma']}, {'allele': '13708A', 'position': 13708, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-ND5'], 'diseases': ['LHON / Increased MS risk / higher freq in PD-ADS']}, {'allele': '15927A', 'position': 15927, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-TT'], 'diseases': ['LHON / Multiple Sclerosis / DEAF1555 increased penetrance / CHD']}, {'allele': '16189C', 'position': 16189, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CR'], 'diseases': ['Diabetes / Cardiomyopathy /cancer risk / mtDNA copy nbr / Metabolic Syndrome / Melanoma patients']}, {'allele': '195C', 'position': 195, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['BD-associated / melanoma pts']}, {'allele': '310C', 'position': 310, 'status': 'Reported', 'homoplasmy': '<NA>', 'heteroplasmy': '<NA>', 'locus': ['MT-CR'], 'diseases': ['Possible protective factor for normal tension glaucoma']}, {'allele': '8393T', 'position': 8393, 'status': 'Reported', 'homoplasmy': '-', 'heteroplasmy': '+', 'locus': ['MT-ATP8'], 'diseases': ['Reversible brain pseudoatrophy']}]