I1496

FASTA

Metadata

Reference

Data

identifier	I1496
alternative_identifiers	['HUNG352', 'NE6']
country	Hungary
continent	Europe
region	Pannonia
culture	Linear Pottery
epoch	Neolithic
group	LBK
comment	-
latitude	47.16999816894531
longitude	19.829999923706055
sex	M
site	Apc-Berekalya
site_detail	Site I
mt_hg	K1a3a3
ychr_hg	C1a2
year_from	-5211
year_to	-4992
date_detail	5211-4992 calBCE (6135±33 BP, MAMS-14821)
bp	6135±33
c14_lab_code	MAMS-14821
c14_sample_tag	True
c14_layer_tag	-
avg_coverage	-
sequence_source	bam
reference	Gamba et al. 2014. Genome flux and stasis in a five millennium transect of European prehistory. Nature Communications, 5(1), ?. (link)
data_link	https://www.ncbi.nlm.nih.gov/sra?term=SRP039766
ychr_snps	['C1a2:V20:6845955G->A', 'C1a2:Z28835:13200044G->T', 'C1:CTS6773:17100606C->T', 'C:CTS2955:14587658T->C', 'C:CTS6266:16780809G->A', 'C:CTS7301:17412198T->C', 'C:CTS10720:22726491C->T', 'C:CTS11598:23185632A->G', 'C:F847:6879365C->T', 'C:F1029:7629098T->C', 'C:F1804:14603298C->T', 'C:F2678:18030738C->T', 'C:F3043:19411754G->A', 'C:F3395:23031841G->A', 'C:F3703:16409159C->A', 'C:Y1767:21186558A->G', 'C:Z3958:7869808C->T', 'C:Z3986:9076205C->T', 'C:Z4099:22168468A->G', 'C1a2:Y10458:14400573C->A', 'C1a2:Y11417:16912050A->G', 'C1a2:Z28838:13670713A->T', 'C1a:CTS11043:22914979G->T', 'C1:F3393:23023974C->A', 'C:CTS3223:14755880C->T', 'C:CTS6492:16932181C->T', 'C:CTS11544:23158264C->G', 'C:CTS11820:23294948T->C', 'C:F1044:7671399A->G', 'C:F1288:8537273G->A', 'C:F1367:8640245C->G', 'C:F1727:14206892C->T', 'C:F1911:15097043C->T', 'C:F2253:16757900C->T', 'C:F2434:17270957A->C', 'C:F2449:17341195G->T', 'C:F2606:17820514C->T', 'C:F2869:18843140C->T', 'C:F2888:18890063C->T', 'C:F2969:19182853C->G', 'C:F3319:22575539A->G', 'C:F3462:23553006C->T', 'C:F3537:23769373A->G', 'C:F3712:17957903T->C', 'C:M130:2734854C->T', 'C:Y2798:13865051G->T', 'C:Y2799:21875538T->C', 'C:Y6691:15896404A->G', 'C:Z3977:8673832C->T', 'C:Z4004:13228027G->T', 'C:Z4014:13656195T->A', 'C:Z4083:21809035G->A', 'C:Z7177:8668533C->T', 'C1a2:V2185:8531334T->A', 'C1a2:V2618:14820317A->G', 'C1a2:V3163:15831202C->T', 'C1a2:Y11346:7952824C->T', 'C1a2:Y11370:13831985T->A', 'C1a2:Y11431:17666147C->T', 'C1a2:Y12186:18110362T->C', 'C:CTS2377:14281450G->A', 'C:CTS3151:14685840C->T', 'C:CTS5813:16490115G->A', 'C:CTS7930:17748163T->C', 'C:F1217:8454895T->C', 'C:IMS-JST029149:2803297C->T', 'C:P260:17286006A->C', 'C:Y4496:8127435A->G', 'C1a2:V1876:8395859A->C', 'C1a2:Y11375:14150505A->G', 'C1a2:Y11405:16567209G->C', 'C1a2:Y11434:17689221T->A', 'C:CTS10442:19457443A->G', 'C:F1871:14954047C->T', 'C:F2858:18832816T->C', 'C:CTS10271:19361507G->A', 'C:F2485:17457010C->T', 'C:CTS4934:15909160C->T', 'C:F2501:17495224A->T', 'C:M216:15437564C->T', 'C1a2:Y11390:15679297A->C', 'C1a2:Y11456:19077475G->A', 'C1a2:Y11469:21366348T->C', 'C1a2:V2722:14971974T->C', 'C1a2:Y10480:21990320A->G', 'C1a2:Y11359:8877530C->T', 'C1a2:Y11492:22672353T->C', 'C1a2:Y11588:8453411C->T', 'C1a2:Z28789:7811623T->G', 'C:CTS9611:18990246G->T']
mitopathos	-