I1500

FASTA

Metadata

Reference

Data

identifier	I1500
alternative_identifiers	['HUNG372', 'NE5', 'UE 1637']
country	Hungary
continent	Europe
region	Pannonia
culture	Linear Pottery
epoch	Neolithic
group	LBK
comment	ALPc_MN
latitude	47.16999816894531
longitude	20.829999923706055
sex	M
site	Kompolt-Kigyoser
site_detail	-
mt_hg	J1c1
ychr_hg	C1a2
year_from	-5210
year_to	-4990
date_detail	5210-4990 calBCE (6164±64 BP, OxA-23763)
bp	6164±64
c14_lab_code	OxA-23763
c14_sample_tag	True
c14_layer_tag	-
avg_coverage	528.0
sequence_source	bam
reference	Gamba et al. 2014. Genome flux and stasis in a five millennium transect of European prehistory. Nature Communications, 5(1), ?. (link)
data_link	https://www.ncbi.nlm.nih.gov/sra?term=SRP039766
ychr_snps	['C1a2:V20:6845955G->A', 'C1a2:Y11342:7688365C->T', 'C1a2:Z28835:13200044G->T', 'C1:CTS6773:17100606C->T', 'C:CTS6266:16780809G->A', 'C:CTS7301:17412198T->C', 'C:CTS11598:23185632A->G', 'C:F847:6879365C->T', 'C:F1029:7629098T->C', 'C:F1804:14603298C->T', 'C:F2678:18030738C->T', 'C:F3043:19411754G->A', 'C:F3395:23031841G->A', 'C:F3703:16409159C->A', 'C:Y1767:21186558A->G', 'C:Z3958:7869808C->T', 'C:Z3986:9076205C->T', 'C:Z4099:22168468A->G', 'C1a2:Y10458:14400573C->A', 'C1a2:Y11594:21183344G->A', 'C1a2:Z28838:13670713A->T', 'C1a:CTS11043:22914979G->T', 'C:CTS3223:14755880C->T', 'C:CTS5958:16574499A->C', 'C:CTS6492:16932181C->T', 'C:CTS10534:19525421C->T', 'C:CTS11544:23158264C->G', 'C:CTS11820:23294948T->C', 'C:F1044:7671399A->G', 'C:F1288:8537273G->A', 'C:F1367:8640245C->G', 'C:F1727:14206892C->T', 'C:F1911:15097043C->T', 'C:F2253:16757900C->T', 'C:F2434:17270957A->C', 'C:F2449:17341195G->T', 'C:F2606:17820514C->T', 'C:F2869:18843140C->T', 'C:F2888:18890063C->T', 'C:F2969:19182853C->G', 'C:F3319:22575539A->G', 'C:F3462:23553006C->T', 'C:F3537:23769373A->G', 'C:F3719:22937380C->A', 'C:Y2798:13865051G->T', 'C:Y2799:21875538T->C', 'C:Y6691:15896404A->G', 'C:Z3977:8673832C->T', 'C:Z4004:13228027G->T', 'C:Z4082:21797986T->A', 'C:Z4083:21809035G->A', 'C:Z7177:8668533C->T', 'C1a2:V219:6664018T->C', 'C1a2:V2185:8531334T->A', 'C1a2:V2618:14820317A->G', 'C1a2:V3163:15831202C->T', 'C1a2:V3703:19035347G->A', 'C1a2:Y10470.1:17711347A->G', 'C1a2:Y10477:21310679T->C', 'C1a2:Y11346:7952824C->T', 'C1a2:Y11370:13831985T->A', 'C1a2:Y11383:14810634T->C', 'C1a2:Y11402:16407947G->A', 'C1a2:Y11431:17666147C->T', 'C1a2:Y11474:21771914C->T', 'C1a2:Y12186:18110362T->C', 'C:CTS2377:14281450G->A', 'C:CTS3151:14685840C->T', 'C:CTS5813:16490115G->A', 'C:CTS7930:17748163T->C', 'C:CTS10083:19246276T->A', 'C:CTS10707:22714249G->A', 'C:CTS10782:22775162C->A', 'C:CTS12472:28588986G->T', 'C:F1030:7638779A->C', 'C:F1217:8454895T->C', 'C:F2305:16871809C->A', 'C:F2803:18663706C->G', 'C:IMS-JST029149:2803297C->T', 'C:P260:17286006A->C', 'C:Y4496:8127435A->G', 'C:Z3981:8822474C->A', 'C:Z4090:21950315G->T']
mitopathos	-