I1502

FASTA

Metadata

Reference

Data

identifier	I1502
alternative_identifiers	['HUNG370', 'BR1']
country	Hungary
continent	Europe
region	Pannonia
culture	Makó
epoch	Bronze Age
group	BAHu
comment	-
latitude	47.16999816894531
longitude	20.829999923706055
sex	F
site	Kompolt-Kigyoser
site_detail	-
mt_hg	K1c1
ychr_hg	-
year_from	-2190
year_to	-1980
date_detail	2190-1980 calBCE (3686±28 BP, OxA-23799)
bp	3686±28
c14_lab_code	OxA-23799
c14_sample_tag	True
c14_layer_tag	-
avg_coverage	-
sequence_source	bam
reference	Gamba et al. 2014. Genome flux and stasis in a five millennium transect of European prehistory. Nature Communications, 5(1), ?. (link)
data_link	https://www.ncbi.nlm.nih.gov/sra?term=SRP039766
ychr_snps	-
mitopathos	[{'allele': '10398G', 'position': 10398, 'status': 'Reported / lineage L & M marker / also hg IJK', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND3'], 'diseases': ['PD protective factor / longevity / altered cell pH / metabolic syndrome / breast cancer risk / Leigh Syndrome risk / ADHD / cognitive decline / SCA2 age of onset / Fuchs endothelial corneal dystrophy']}, {'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '146C', 'position': 146, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CR'], 'diseases': ['Absence of Endometriosis']}, {'allele': '9055A', 'position': 9055, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ATP6'], 'diseases': ['PD protective factor']}]

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