I1550
FASTA
Metadata
Reference
Data
| identifier | I1550 |
|---|---|
| alternative_identifiers | ['HAL19'] |
| country | Germany |
| continent | Europe |
| region | central Europe |
| culture | Linear Pottery |
| epoch | Neolithic |
| group | LBK |
| comment | - |
| latitude | 51.900001525878906 |
| longitude | 11.050000190734863 |
| sex | F |
| site | Halberstadt-Sonntagsfeld |
| site_detail | - |
| mt_hg | K1a2 |
| ychr_hg | - |
| year_from | -5500 |
| year_to | -4850 |
| date_detail | 5500-4850 BCE |
| bp | - |
| c14_lab_code | - |
| c14_sample_tag | - |
| c14_layer_tag | - |
| avg_coverage | - |
| sequence_source | bam |
| reference | Lipson et al. 2017. Parallel palaeogenomic transects reveal complex genetic history of early European farmers. Nature, 551(7680), 368-372. (link) |
| data_link | https://www.ebi.ac.uk/ena/data/view/PRJEB22629 |
| ychr_snps | - |
| mitopathos | [{'allele': '10398G', 'position': 10398, 'status': 'Reported / lineage L & M marker / also hg IJK', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND3'], 'diseases': ['PD protective factor / longevity / altered cell pH / metabolic syndrome / breast cancer risk / Leigh Syndrome risk / ADHD / cognitive decline / SCA2 age of onset / Fuchs endothelial corneal dystrophy']}, {'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '16093C', 'position': 16093, 'status': 'Reported', 'homoplasmy': '-', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['Cyclic Vomiting Syndrome']}, {'allele': '310C', 'position': 310, 'status': 'Reported', 'homoplasmy': '<NA>', 'heteroplasmy': '<NA>', 'locus': ['MT-CR'], 'diseases': ['Possible protective factor for normal tension glaucoma']}, {'allele': '9055A', 'position': 9055, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ATP6'], 'diseases': ['PD protective factor']}] |
I1550
