identifier I2014
alternative_identifiers ['HAL15a']
country Germany
continent Europe
region central Europe
culture Linear Pottery
epoch Neolithic
group LBK
comment -
latitude 51.89583206176758
longitude 11.046667098999023
sex M
site Halberstadt-Sonntagsfeld
site_detail -
mt_hg N1a1a1a3
ychr_hg G2
year_from -5199
year_to -4857
date_detail 5199-4857 calBCE (6081±30 BP, KIA-40344)
bp 6081±30
c14_lab_code KIA-40344
c14_sample_tag True
c14_layer_tag -
avg_coverage -
sequence_source bam
reference Lipson et al. 2017. Parallel palaeogenomic transects reveal complex genetic history of early European farmers. Nature, 551(7680), 368-372. (link)
data_link https://www.ebi.ac.uk/ena/data/view/PRJEB22629
ychr_snps -
mitopathos [{'allele': '10398G', 'position': 10398, 'status': 'Reported / lineage L & M marker / also hg IJK', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND3'], 'diseases': ['PD protective factor / longevity / altered cell pH / metabolic syndrome / breast cancer risk / Leigh Syndrome risk / ADHD / cognitive decline / SCA2 age of onset / Fuchs endothelial corneal dystrophy']}, {'allele': '12705T', 'position': 12705, 'status': 'Reported', 'homoplasmy': '<NA>', 'heteroplasmy': '<NA>', 'locus': ['MT-CO1'], 'diseases': ['Possible protective factor for normal tension glaucoma']}, {'allele': '15043A', 'position': 15043, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CYB'], 'diseases': ['MDD-associated']}, {'allele': '16129A', 'position': 16129, 'status': 'Reported', 'homoplasmy': '-', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['Cyclic Vomiting Syndrome with Migraine']}, {'allele': '3336C', 'position': 3336, 'status': 'Reported', 'homoplasmy': '-', 'heteroplasmy': '+', 'locus': ['MT-ND1'], 'diseases': ['Carotid atherosclerosis risk']}, {'allele': '669C', 'position': 669, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-RNR1'], 'diseases': ['DEAF']}]