identifier I2158
alternative_identifiers ['SIC2', 'Oriente C']
country Italy
continent Europe
region southern Europe
culture Hunter-Gatherer
epoch Epigravettian
group HGS
comment -
latitude 37.93000030517578
longitude 12.329999923706055
sex F
site Grotta d’Oriente, Favignana Island, Egadi islands, Sicily
site_detail -
mt_hg U2'3'4'7'8'9
ychr_hg -
year_from -14776
year_to -9873
date_detail 14776-9873 BCE (Late Epigravettian, based on being above sublayers with dated charcoal: Sublayer 7D at 12250-11840 calBCE (12149±65 BP, LTL-14260A) and Sublayer 7E at 12220-11850 calBCE (12132±80 BP, LTL-873A). The range is from a Bayesian modeling analysis)
bp -
c14_lab_code -
c14_sample_tag -
c14_layer_tag True
avg_coverage -
sequence_source bam
reference Mathieson et al. 2018. The genomic history of southeastern Europe. Nature, 555(7695), 197-203. (link)
data_link https://www.ebi.ac.uk/ena/data/view/PRJEB22652
ychr_snps -
mitopathos [{'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '150T', 'position': 150, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['Longevity / Cervical Carcinoma / HPV infection risk']}]