I2163

FASTA

Metadata

Reference

Data

identifier I2163
alternative_identifiers ['Merich2', 'Burial Mound N1', 'individual N5']
country Bulgaria
continent Europe
region Balkans
culture Bulgaria_MLBA
epoch Bronze Age
group BABA
comment -
latitude 42.130001068115234
longitude 25.489999771118164
sex M
site Merichleri, Kairyaka necropolis
site_detail Season '12, burial mound N 1
mt_hg U5a2
ychr_hg R1a1a1b2
year_from -1750
year_to -1625
date_detail 1750-1625 calBCE (3400±30 BP, Beta-432796)
bp 3400±30
c14_lab_code Beta-432796
c14_sample_tag True
c14_layer_tag -
avg_coverage -
sequence_source bam
reference Mathieson et al. 2018. The genomic history of southeastern Europe. Nature, 555(7695), 197-203. (link)
data_link https://www.ebi.ac.uk/ena/data/view/PRJEB22652
ychr_snps ['R1a1a1:Page7:14498990C->T', 'R1a1a:L168:16202177A->G', 'R:CTS3622:15078469C->G', 'R:F459:18017528G->T', 'R:L1347:22818334C->T', 'R1:CTS2565:14366723C->T', 'R1:CTS5611:16394489T->G', 'R1:L875:16742224A->G', 'R1:P286:17716251C->T', 'R:CTS8311:17930099C->A', 'R:F82:7548900G->A', 'R:M651:9889199G->A', 'R:P280:21843090C->G', 'R1a1a:M515:14054623T->A', 'R1a:L62:17891241A->G', 'R1a:L63:18162834T->C', 'R1a:L145:14138745C->A', 'R1:CTS997:7132713G->A', 'R1:P231:9989615A->G', 'R1:P236:17782178C->G', 'R1:P238:7771131G->A', 'R1:P294:7570822G->C', 'R:CTS5815:16491135C->T', 'R:CTS7876:17722802G->A', 'R:CTS7880:17723850C->T', 'R:F63:7177189G->A', 'R:F295:15594523A->G', 'R:F652:23631629C->A', 'R:FGC1168:15667208G->C', 'R:L1225:22733758C->G', 'R:M734:18066156C->T', 'R:M799:23134896C->T', 'R:P227:21409706G->C', 'R:CTS2913:14561760A->G', 'R:F765:24360964G->A', 'R1:CTS3123:14674176A->C', 'R1:P225:15590342G->T', 'R:F154:8558505T->C', 'R:CTS9005:18611644A->T', 'R1a1a1b:S224:8245045C->T', 'R1a1a1b:S441:7683058G->A', 'R1a1a1b2:F992:7552356G->A']
mitopathos [{'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '16093C', 'position': 16093, 'status': 'Reported', 'homoplasmy': '-', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['Cyclic Vomiting Syndrome']}, {'allele': '16192T', 'position': 16192, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-CR'], 'diseases': ['Melanoma patients']}, {'allele': '16270T', 'position': 16270, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-CR'], 'diseases': ['Melanoma patients']}, {'allele': '7444A', 'position': 7444, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CO1'], 'diseases': ['LHON / SNHL / DEAF']}]