I2165

FASTA

Metadata

Reference

Data

identifier	I2165
alternative_identifiers	['Merich4', 'Burial mound N1', 'Individual N6']
country	Bulgaria
continent	Europe
region	Balkans
culture	Bulgaria_EBA
epoch	Bronze Age
group	BABA
comment	-
latitude	42.130001068115234
longitude	25.489999771118164
sex	M
site	Merichleri, Kairyaka necropolis
site_detail	Season '12, burial mound N 1
mt_hg	T2f
ychr_hg	I2a2a1b1b
year_from	-3020
year_to	-2895
date_detail	3020-2895 calBCE (4340±30 BP, Beta-432797)
bp	4340±30
c14_lab_code	Beta-432797
c14_sample_tag	True
c14_layer_tag	-
avg_coverage	-
sequence_source	bam
reference	Mathieson et al. 2018. The genomic history of southeastern Europe. Nature, 555(7695), 197-203. (link)
data_link	https://www.ebi.ac.uk/ena/data/view/PRJEB22652
ychr_snps	['I2:M438:16638804A->G', 'I:CTS674:6943522C->T', 'I:CTS1800:14073053G->A', 'I:CTS2193:14214481G->T', 'I:CTS2387:14286853T->C', 'I:CTS2514:14337364T->C', 'I:CTS2536:14352669G->A', 'I:CTS3384:14884659A->C', 'I:CTS4088:15389836T->C', 'I:CTS4209:15479899T->A', 'I:CTS6265:16780748C->G', 'I:CTS7469:17497181C->A', 'I:CTS7502:17511797A->G', 'I:CTS7831:17692855T->A', 'I:CTS8420:18018313C->A', 'I:CTS8963:18582617C->T', 'I:CTS10058:19233673A->G', 'I:CTS10941:22845794A->G', 'I:CTS11540:23156725C->T', 'I:FGC2412:21689728A->G', 'I:FGC2413:8262092C->T', 'I:FGC2415:13835003T->C', 'I:FI2:8382265C->G', 'I:L503:21359407C->G', 'I:L578:8267857G->A', 'I:L758:8536868C->G', 'I:L846:7856500C->T', 'I:L1197:14974451C->T', 'I:PF3640:7681156T->A', 'I:PF3641:7688470T->C', 'I:PF3661:8484606C->A', 'I:PF3677:9891668G->A', 'I:PF3794:21067903C->T', 'I2:PF3664:8567995G->A', 'I:CTS88:2723755G->A', 'I:CTS3517:14986989T->G', 'I:CTS8876:18257568G->A', 'I:CTS9860:19104986G->A', 'I:CTS11979:23401471C->T', 'I:FGC2416:7642823G->T', 'I:L41:19048602G->A', 'I:L772:15615533C->A', 'I:L847:23154034C->T', 'I:PF3797:21130059A->G', 'I:PF3800:21402723A->G', 'I:PF3806:21525069G->A', 'I:PF3814:21839183A->G', 'I:PF3817:21939618G->A', 'I:Z16985:13804066G->C', 'I2:L68:18700150C->T', 'I:CTS646:6926038T->A', 'I:CTS4848:15862842C->T', 'I:CTS7540:17525137A->G', 'I:FI3:8485677C->A', 'I:PF3742:16354708G->A', 'I:CTS5650:16415916A->G', 'I:CTS8345:17949402C->G', 'I:PF3837:22573702G->A', 'I:L755:8465165C->T', 'I2a2a1:CTS9183:18732197A->G', 'I2a2:P217:7628484C->T', 'I:CTS9269:18789763C->T', 'I:PF3666:8728974T->G', 'I2a2:L35:22725379C->A', 'I2a2:L368:6931594C->T', 'I2a2a:P223:16699334C->G', 'I:L751:18394743A->G', 'I2a2a1b1b:L699:2663920A->G', 'I2a2a1b1:L702:7629205C->T', 'I2a2a1b:CTS10100:19255890G->A', 'I2a2a:P220:24475669G->T', 'I2a2a:P221:8353707C->A', 'I2a2:L37:17516123T->C', 'I2a2:L181:19077754G->T', 'I2a2:P218:17493630T->G', 'I:CTS9618:18992894T->C', 'I:FGC2417:10051801G->A']
mitopathos	[{'allele': '11251G', 'position': 11251, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-ND4'], 'diseases': ['Reduced risk of PD']}, {'allele': '15928A', 'position': 15928, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-TT'], 'diseases': ['Multiple Sclerosis / idiopathic repeat miscarriage / AD protection']}, {'allele': '4216C', 'position': 4216, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND1'], 'diseases': ['LHON / Insulin Resistance /possible adaptive high altitude variant / miscarriage']}, {'allele': '4917G', 'position': 4917, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND2'], 'diseases': ['LHON / Insulin Resistance / AMD / NRTI-PN']}]