I2175

FASTA

Metadata

Reference

Data

identifier	I2175
alternative_identifiers	['10']
country	Bulgaria
continent	Europe
region	Balkans
culture	Bulgaria_EBA
epoch	Bronze Age
group	BABA
comment	-
latitude	43.060001373291016
longitude	26.979999542236328
sex	M
site	Smyadovo
site_detail	-
mt_hg	K1c1
ychr_hg	I2a2a1b1
year_from	-3328
year_to	-3015
date_detail	3328-3015 calBCE (4445±35 BP, Ly-5515)
bp	4445±35
c14_lab_code	Ly-5515
c14_sample_tag	True
c14_layer_tag	-
avg_coverage	-
sequence_source	bam
reference	Mathieson et al. 2018. The genomic history of southeastern Europe. Nature, 555(7695), 197-203. (link)
data_link	https://www.ebi.ac.uk/ena/data/view/PRJEB22652
ychr_snps	['I2:M438:16638804A->G', 'I:CTS1800:14073053G->A', 'I:CTS4209:15479899T->A', 'I:CTS7831:17692855T->A', 'I:CTS8420:18018313C->A', 'I:L578:8267857G->A', 'I:L1197:14974451C->T', 'I:PF3641:7688470T->C', 'I:PF3665:8643763A->G', 'I:CTS6231:16751000C->T', 'I:M258:15023364T->C', 'I:CTS6497:16939794A->T', 'I:PF3814:21839183A->G', 'I:PF3817:21939618G->A', 'I:CTS7540:17525137A->G', 'I:PF3837:22573702G->A', 'I:L755:8465165C->T', 'I2a2a1:CTS9183:18732197A->G', 'I2a2a:P222:18888200C->G', 'I2a2a1b1:L702:7629205C->T', 'I2a2a:P220:24475669G->T', 'I2a2a:P221:8353707C->A', 'I2a2a1b:CTS10057:19232160C->T']
mitopathos	[{'allele': '10398G', 'position': 10398, 'status': 'Reported / lineage L & M marker / also hg IJK', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND3'], 'diseases': ['PD protective factor / longevity / altered cell pH / metabolic syndrome / breast cancer risk / Leigh Syndrome risk / ADHD / cognitive decline / SCA2 age of onset / Fuchs endothelial corneal dystrophy']}, {'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '146C', 'position': 146, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CR'], 'diseases': ['Absence of Endometriosis']}, {'allele': '9055A', 'position': 9055, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ATP6'], 'diseases': ['PD protective factor']}]