I2364

FASTA

Metadata

Reference

Data

identifier	I2364
alternative_identifiers	['GEN_10a', 'Grave 219/B']
country	Hungary
continent	Europe
region	Pannonia
culture	Bell Beaker
epoch	Copper Age
group	BBC
comment	-
latitude	47.599159240722656
longitude	19.0545597076416
sex	M
site	Budapest-Békásmegyer
site_detail	-
mt_hg	U5a2b
ychr_hg	H2
year_from	-2468
year_to	-2063
date_detail	2468-2063 calBCE [2292-2063 calBCE (3779±28 BP, DeA-6749), 2468-2285 calBCE (3883±29 BP, DeA-7216)]
bp	3883±29
c14_lab_code	DeA-7216
c14_sample_tag	True
c14_layer_tag	-
avg_coverage	119.7020034790039
sequence_source	bam
reference	Olalde et al. 2018. The Beaker phenomenon and the genomic transformation of northwest Europe. Nature, 555(7695), 190-196. (link)
data_link	http://www.ebi.ac.uk/ena/data/view/PRJEB23635
ychr_snps	-
mitopathos	[{'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '16192T', 'position': 16192, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-CR'], 'diseases': ['Melanoma patients']}, {'allele': '16270T', 'position': 16270, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-CR'], 'diseases': ['Melanoma patients']}]