I2403

FASTA

Metadata

Reference

Data

identifier	I2403
alternative_identifiers	['3.IV']
country	Poland
continent	Europe
region	central Europe
culture	Globular Amphora
epoch	Bronze Age
group	GAC
comment	-
latitude	52.849998474121094
longitude	17.8799991607666
sex	M
site	Kierzkowo
site_detail	-
mt_hg	U5b2b1
ychr_hg	I2a2
year_from	-2870
year_to	-2575
date_detail	2870-2575 calBCE (4120±30 BP, Beta-430712)
bp	4120±30
c14_lab_code	Beta-430712
c14_sample_tag	True
c14_layer_tag	-
avg_coverage	67.38999938964844
sequence_source	fasta
reference	Tassi et al. 2017. Genome diversity in the Neolithic Globular Amphorae culture and the spread of Indo-European languages. Proceedings of the Royal Society B: Biological Sciences, 284(1867), 20171540. (link)
data_link	https://www.ncbi.nlm.nih.gov/nuccore/MF114212
ychr_snps	['I:CTS6265:16780748C->G', 'I:L503:21359407C->G', 'I:L578:8267857G->A', 'I:FI3:8485677C->A', 'I2a2:L181:19077754G->T', 'I2a2:P218:17493630T->G']
mitopathos	[{'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12634G', 'position': 12634, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-ND5'], 'diseases': ['Thyroid Cancer Cell Line']}, {'allele': '13637G', 'position': 13637, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Possible LHON factor']}, {'allele': '150T', 'position': 150, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['Longevity / Cervical Carcinoma / HPV infection risk']}, {'allele': '15497A', 'position': 15497, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CYB'], 'diseases': ['EXIT / Obesity']}, {'allele': '16270T', 'position': 16270, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-CR'], 'diseases': ['Melanoma patients']}]