I2425

FASTA

Metadata

Reference

Data

identifier	I2425
alternative_identifiers	['28']
country	Bulgaria
continent	Europe
region	Balkans
culture	Bulgaria_Late_Chalcolithic
epoch	Copper Age
group	CABA
comment	-
latitude	43.060001373291016
longitude	26.770000457763672
sex	F
site	Sushina
site_detail	-
mt_hg	T2c1b
ychr_hg	-
year_from	-4679
year_to	-4450
date_detail	4679-4450 calBCE (5690±40 BP, Poz-83662)
bp	5690±40
c14_lab_code	Poz-83662
c14_sample_tag	True
c14_layer_tag	-
avg_coverage	-
sequence_source	bam
reference	Mathieson et al. 2018. The genomic history of southeastern Europe. Nature, 555(7695), 197-203. (link)
data_link	https://www.ebi.ac.uk/ena/data/view/PRJEB22652
ychr_snps	-
mitopathos	[{'allele': '11251G', 'position': 11251, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-ND4'], 'diseases': ['Reduced risk of PD']}, {'allele': '146C', 'position': 146, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CR'], 'diseases': ['Absence of Endometriosis']}, {'allele': '15928A', 'position': 15928, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-TT'], 'diseases': ['Multiple Sclerosis / idiopathic repeat miscarriage / AD protection']}, {'allele': '4216C', 'position': 4216, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND1'], 'diseases': ['LHON / Insulin Resistance /possible adaptive high altitude variant / miscarriage']}, {'allele': '4917G', 'position': 4917, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND2'], 'diseases': ['LHON / Insulin Resistance / AMD / NRTI-PN']}, {'allele': '6261A', 'position': 6261, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CO1'], 'diseases': ['Prostate Cancer / LHON']}]