I2430

FASTA

Metadata

Reference

Data

identifier	I2430
alternative_identifiers	['40']
country	Bulgaria
continent	Europe
region	Balkans
culture	Bulgaria_Late_Chalcolithic
epoch	Copper Age
group	CABA
comment	-
latitude	43.060001373291016
longitude	26.979999542236328
sex	M
site	Smyadovo
site_detail	-
mt_hg	K1a26
ychr_hg	R1b1a
year_from	-4545
year_to	-4450
date_detail	4545-4450 calBCE (5670±30 BP, Beta-432806)
bp	5670±30
c14_lab_code	Beta-432806
c14_sample_tag	True
c14_layer_tag	-
avg_coverage	-
sequence_source	bam
reference	Mathieson et al. 2018. The genomic history of southeastern Europe. Nature, 555(7695), 197-203. (link)
data_link	https://www.ebi.ac.uk/ena/data/view/PRJEB22652
ychr_snps	['R:F459:18017528G->T', 'R:L1347:22818334C->T', 'R:M613:7133986G->C', 'R:M764:21263029G->A', 'R1:CTS2565:14366723C->T', 'R1:CTS5611:16394489T->G', 'R:CTS8311:17930099C->A', 'R:F82:7548900G->A', 'R1b1a:FGC36:13822833G->T', 'R1b1a:L761:16773870A->G', 'R1:P236:17782178C->G', 'R:CTS6417:16882568T->C', 'R:F63:7177189G->A', 'R:F652:23631629C->A', 'R:FGC1168:15667208G->C', 'R:L1225:22733758C->G', 'R:M734:18066156C->T', 'R:P227:21409706G->C', 'R:F370:16856357T->C', 'R1b1a:CTS8612:18109555C->A', 'R1b1a:PF6271:23984056G->A', 'R1b1:L278:18914441C->T', 'R1b1a:A702:10038192G->A', 'R1b1:CTS2134:14193384G->A', 'R1b1a:FGC41:7900883C->A']
mitopathos	[{'allele': '10398G', 'position': 10398, 'status': 'Reported / lineage L & M marker / also hg IJK', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND3'], 'diseases': ['PD protective factor / longevity / altered cell pH / metabolic syndrome / breast cancer risk / Leigh Syndrome risk / ADHD / cognitive decline / SCA2 age of onset / Fuchs endothelial corneal dystrophy']}, {'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '16093C', 'position': 16093, 'status': 'Reported', 'homoplasmy': '-', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['Cyclic Vomiting Syndrome']}, {'allele': '195C', 'position': 195, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['BD-associated / melanoma pts']}, {'allele': '9055A', 'position': 9055, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ATP6'], 'diseases': ['PD protective factor']}]