I2431

FASTA

Metadata

Reference

Data

identifier	I2431
alternative_identifiers	['41']
country	Bulgaria
continent	Europe
region	Balkans
culture	Bulgaria_Middle_Chalcolithic
epoch	Copper Age
group	CABA
comment	-
latitude	43.099998474121094
longitude	26.719999313354492
sex	M
site	Ivanovo
site_detail	-
mt_hg	N1b2
ychr_hg	G2a2b2a1a1c1a
year_from	-4725
year_to	-4605
date_detail	4725-4605 calBCE (5820±30 BP, Beta-432807)
bp	5820±30
c14_lab_code	Beta-432807
c14_sample_tag	True
c14_layer_tag	-
avg_coverage	-
sequence_source	bam
reference	Mathieson et al. 2018. The genomic history of southeastern Europe. Nature, 555(7695), 197-203. (link)
data_link	https://www.ebi.ac.uk/ena/data/view/PRJEB22652
ychr_snps	['G2a2b2a:CTS688:6953417T->C', 'G2a2b2a:CTS4454^:15655268C->T', 'G2a2b2a:CTS10366:19423576G->A', 'G2a2b2a:PF3329:8478026C->A', 'G2a2b2a:PF3342:21935606G->T', 'G2a2b2a:Z3243:21935550A->G', 'G2a2b:F2535:17589788C->T', 'G2a2b:F3139:21151007T->C', 'G2a2b:Z3260:13671506G->T', 'G2a:CTS6630:17022002C->T', 'G2a:F3088:20813445G->A', 'G2a:F4086:7727677C->T', 'G2a:L31:14028148C->A', 'G2a:P15:23244026C->T', 'G2a:PF3141:23973594T->G', 'G2:CTS10089:19248446G->A', 'G2:F1239:8482393C->T', 'G2:F1294:8545324T->A', 'G2:F1393:8719593G->A', 'G2:F3198:21401188G->T', 'G2:F3220:21637589G->C', 'G2:F3344:22697266G->A', 'G2:F3536:23768744C->T', 'G2:L89:7978725C->T', 'G2:M3579:21147058A->G', 'G:CTS34:2681740G->A', 'G:CTS692:6955839A->G', 'G:CTS1283:7309873T->G', 'G:CTS2251:14235140C->T', 'G:CTS2271:14243137C->T', 'G:CTS2357:14273557C->T', 'G:CTS2506:14333087C->A', 'G:CTS4238:15504804C->T', 'G:CTS4761:15802681C->T', 'G:CTS6957:17210745C->T', 'G:CTS7269:17393643T->C', 'G:CTS7674:17610571G->A', 'G:CTS8023:17798903T->C', 'G:CTS8531:18070349G->C', 'G:CTS9011:18615020A->T', 'G:CTS10026:19215139A->T', 'G:CTS10723:22730922C->G', 'G:CTS11185:22997377C->G', 'G:CTS11228:23023554C->A', 'G:CTS13035:28783924C->A', 'G:L116:14989721C->G', 'G:L382:14469411C->A', 'G:L522:17533325A->C', 'G:L837:17853245A->G', 'G:M3450:6931141C->G', 'G:M3473:7927218C->T', 'G:M3474:7930724C->A', 'G:M3479:8231862G->C', 'G:M3480:8327892T->A', 'G:M3482:8454233G->A', 'G:M3485:8563874C->T', 'G:M3486:8600158A->T', 'G:M3597:21865624G->A', 'G:M3604:22167631C->T', 'G:M3628:23793740C->A', 'G:PF2952:14577177G->A', 'G:PF3045:20823823C->T', 'G:PF3134:15275200C->G', 'G:Z3262:13676268G->A', 'G2a2b2a1a:PF3346:24498136T->C', 'G2a2b2a1:PF3337:18023391G->T', 'G2a2b2a1:Y287:9381065G->T', 'G2a2b2a:CTS424:6744902C->T', 'G2a2b2a:CTS946:7100848A->G', 'G2a2b:F2184:16512478G->A', 'G2a:Z3240:10060449A->G', 'G2:CTS4264:15528792T->C', 'G2:CTS4413:15635425T->C', 'G2:CTS4703:15776024C->T', 'G2:CTS6316:16817402C->T', 'G2:CTS6742:17088129G->C', 'G2:F1189:8427005A->G', 'G2:M3469:7823146G->T', 'G2:PF2909:13205148A->G', 'G:CTS995:7132348G->C', 'G:CTS1612:13987230A->G', 'G:CTS2120:14188094G->T', 'G:CTS2136:14195292A->G', 'G:CTS2517:14338503C->T', 'G:CTS4101:15397649A->G', 'G:CTS4523:15693336G->A', 'G:CTS5504:16325291T->C', 'G:CTS6483:16929270C->T', 'G:CTS9894:19124322A->T', 'G:CTS10721:22729194C->T', 'G:L154:8614138T->G', 'G:M3264:8318375G->T', 'G:M3266:8422993T->A', 'G:M3464:7537950C->T', 'G:M3466:7614386G->A', 'G:M3470:7830068T->C', 'G:M3471:7840218C->A', 'G:M3481:8387539G->A', 'G:M3580:21162869C->G', 'G:M3582:21334507G->T', 'G:M3585:21412501G->A', 'G:Page94:2846401C->T', 'G:PF2836:6478903G->A', 'G:S1435:13658486C->G', 'G2a:CTS6026:16620480C->T', 'G2a:CTS6753:17090976C->T', 'G:CTS4479:15667235G->A', 'G:CTS5757:16469840A->G', 'G:CTS9707:19030998C->A', 'G:CTS10706:22714204G->T', 'G:CTS12654:28658660G->T', 'G:M3487:8602816G->C', 'G2a:F1975:15588776A->C', 'G2a:CTS9318:18819146T->A', 'G:CTS2125:14190447A->Ghet', 'G:CTS5658:16419934T->C', 'G:CTS6073:16651032G->A', 'G:M3248:7565637G->A', 'G:M3257:7991847G->A', 'G2a2b2a1a1c1a:CTS4472:15663626A->G', 'G2a2b2a1a1c1a:CTS6763:17097462C->Ahet', 'G2a2b2a1a1c1a:CTS11388:23090368A->G', 'G2a2b2a1a1c1a:Z3423:19251438G->T']
mitopathos	[{'allele': '12705T', 'position': 12705, 'status': 'Reported', 'homoplasmy': '<NA>', 'heteroplasmy': '<NA>', 'locus': ['MT-CO1'], 'diseases': ['Possible protective factor for normal tension glaucoma']}, {'allele': '16390A', 'position': 16390, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CR'], 'diseases': ['POAG - potential for association']}, {'allele': '8836G', 'position': 8836, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ATP6'], 'diseases': ['LHON']}]