I2440

FASTA

Metadata

Reference

Data

identifier	I2440
alternative_identifiers	['7.VI']
country	Poland
continent	Europe
region	central Europe
culture	Globular Amphora
epoch	Bronze Age
group	GAC
comment	-
latitude	52.849998474121094
longitude	17.8799991607666
sex	M
site	Kierzkowo
site_detail	-
mt_hg	H1b
ychr_hg	I2
year_from	-3100
year_to	-2900
date_detail	3100-2900 BCE (father to directly dated I2407: 3095-2915 calBCE (4390±30 BP, Beta-430714)
bp	-
c14_lab_code	-
c14_sample_tag	-
c14_layer_tag	True
avg_coverage	37.40999984741211
sequence_source	fasta
reference	Tassi et al. 2017. Genome diversity in the Neolithic Globular Amphorae culture and the spread of Indo-European languages. Proceedings of the Royal Society B: Biological Sciences, 284(1867), 20171540. (link)
data_link	https://www.ncbi.nlm.nih.gov/nuccore/MF114216
ychr_snps	['I:CTS7469:17497181C->A', 'I:FGC2412:21689728A->G', 'I:FGC2413:8262092C->T', 'I:FI2:8382265C->G', 'I:L578:8267857G->A', 'I:PF3640:7681156T->A', 'I:PF3641:7688470T->C', 'I:FI4:8873160G->T', 'I2:L68:18700150C->T']
mitopathos	[{'allele': '146C', 'position': 146, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CR'], 'diseases': ['Absence of Endometriosis']}, {'allele': '16189C', 'position': 16189, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CR'], 'diseases': ['Diabetes / Cardiomyopathy /cancer risk / mtDNA copy nbr / Metabolic Syndrome / Melanoma patients']}, {'allele': '3010A', 'position': 3010, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-RNR2'], 'diseases': ['Cyclic Vomiting Syndrome with Migraine / high altitude disease risk factor']}]