I2445

FASTA

Metadata

Reference

Data

identifier I2445
alternative_identifiers ['SK 8633 (YCF 95)']
country Great Britain
continent Europe
region British Isles
culture Bell Beaker
epoch Bronze Age
group BBC
comment -
latitude 51.795684814453125
longitude -1.3198916912078857
sex M
site Yarnton, Oxfordshire, England
site_detail -
mt_hg X2b6
ychr_hg R1b1a1a2a1a2c1
year_from -2396
year_to -1929
date_detail 2396-1929 calBCE [2136-1929 calBCE (3650±35 BP, Poz-83407), 2396-2042 calBCE (3785±40 BP, OxA-8806)]
bp 3785±40
c14_lab_code OxA-8806
c14_sample_tag True
c14_layer_tag -
avg_coverage 2027.550048828125
sequence_source bam
reference Olalde et al. 2018. The Beaker phenomenon and the genomic transformation of northwest Europe. Nature, 555(7695), 190-196. (link)
data_link http://www.ebi.ac.uk/ena/data/view/PRJEB23635
ychr_snps -
mitopathos [{'allele': '12705T', 'position': 12705, 'status': 'Reported', 'homoplasmy': '<NA>', 'heteroplasmy': '<NA>', 'locus': ['MT-CO1'], 'diseases': ['Possible protective factor for normal tension glaucoma']}, {'allele': '13708A', 'position': 13708, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-ND5'], 'diseases': ['LHON / Increased MS risk / higher freq in PD-ADS']}, {'allele': '15927A', 'position': 15927, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-TT'], 'diseases': ['LHON / Multiple Sclerosis / DEAF1555 increased penetrance / CHD']}, {'allele': '16183C', 'position': 16183, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['Melanoma patients']}, {'allele': '16189C', 'position': 16189, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CR'], 'diseases': ['Diabetes / Cardiomyopathy /cancer risk / mtDNA copy nbr / Metabolic Syndrome / Melanoma patients']}, {'allele': '195C', 'position': 195, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['BD-associated / melanoma pts']}, {'allele': '310C', 'position': 310, 'status': 'Reported', 'homoplasmy': '<NA>', 'heteroplasmy': '<NA>', 'locus': ['MT-CR'], 'diseases': ['Possible protective factor for normal tension glaucoma']}, {'allele': '8393T', 'position': 8393, 'status': 'Reported', 'homoplasmy': '-', 'heteroplasmy': '+', 'locus': ['MT-ATP8'], 'diseases': ['Reversible brain pseudoatrophy']}]