I2457

FASTA

Metadata

Reference

Data

identifier	I2457
alternative_identifiers	['13382']
country	Great Britain
continent	Europe
region	British Isles
culture	England_CA_EBA
epoch	Bronze Age
group	BABI
comment	-
latitude	51.15999984741211
longitude	-1.7699999809265137
sex	M
site	Amesbury Down, Wiltshire, England
site_detail	-
mt_hg	I4a
ychr_hg	R1b1a1a2a1a2c
year_from	-2467
year_to	-2030
date_detail	2467-2030 calBCE [2467-2290 calBCE (3890±30 BP, SUERC-36210), 2199-2030 calBCE (3717±28 BP, SUERC-69975)]
bp	3890±30
c14_lab_code	SUERC-36210
c14_sample_tag	True
c14_layer_tag	-
avg_coverage	542.1959838867188
sequence_source	bam
reference	Olalde et al. 2018. The Beaker phenomenon and the genomic transformation of northwest Europe. Nature, 555(7695), 190-196. (link)
data_link	http://www.ebi.ac.uk/ena/data/view/PRJEB23635
ychr_snps	-
mitopathos	[{'allele': '10398G', 'position': 10398, 'status': 'Reported / lineage L & M marker / also hg IJK', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND3'], 'diseases': ['PD protective factor / longevity / altered cell pH / metabolic syndrome / breast cancer risk / Leigh Syndrome risk / ADHD / cognitive decline / SCA2 age of onset / Fuchs endothelial corneal dystrophy']}, {'allele': '12705T', 'position': 12705, 'status': 'Reported', 'homoplasmy': '<NA>', 'heteroplasmy': '<NA>', 'locus': ['MT-CO1'], 'diseases': ['Possible protective factor for normal tension glaucoma']}, {'allele': '15043A', 'position': 15043, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CYB'], 'diseases': ['MDD-associated']}, {'allele': '15924G', 'position': 15924, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-TT'], 'diseases': ['LIMM']}, {'allele': '16129A', 'position': 16129, 'status': 'Reported', 'homoplasmy': '-', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['Cyclic Vomiting Syndrome with Migraine']}, {'allele': '310C', 'position': 310, 'status': 'Reported', 'homoplasmy': '<NA>', 'heteroplasmy': '<NA>', 'locus': ['MT-CR'], 'diseases': ['Possible protective factor for normal tension glaucoma']}, {'allele': '8519A', 'position': 8519, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ATP8'], 'diseases': ['Susceptibility to bullous pemphigoid']}]