I2510

FASTA

Metadata

Reference

Data

identifier	I2510
alternative_identifiers	['No1', 'No. 1']
country	Bulgaria
continent	Europe
region	Balkans
culture	Bulgaria_BA
epoch	Bronze Age
group	BABA
comment	-
latitude	43.15999984741211
longitude	25.8799991607666
sex	M
site	Dzhulyunitsa
site_detail	-
mt_hg	H4a1
ychr_hg	G2a2a1a2
year_from	-2906
year_to	-2710
date_detail	2906-2710 calBCE (4235±25 BP, PSUAMS-1815)
bp	4235±25
c14_lab_code	PSUAMS-1815
c14_sample_tag	True
c14_layer_tag	-
avg_coverage	-
sequence_source	bam
reference	Mathieson et al. 2018. The genomic history of southeastern Europe. Nature, 555(7695), 197-203. (link)
data_link	https://www.ebi.ac.uk/ena/data/view/PRJEB22652
ychr_snps	['G2a2:CTS4367:15615340C->G', 'G2a:F2529:17571517A->G', 'G2a:F3088:20813445G->A', 'G2a:F4086:7727677C->T', 'G2a:L31:14028148C->A', 'G2a:M3397:21605685G->C', 'G2a:P15:23244026C->T', 'G2a:PF3141:23973594T->G', 'G2:CTS2406:14294068C->T', 'G2:CTS7662:17597715C->T', 'G2:CTS10089:19248446G->A', 'G2:F1239:8482393C->T', 'G2:F1294:8545324T->A', 'G2:F1393:8719593G->A', 'G2:F3198:21401188G->T', 'G2:F3220:21637589G->C', 'G2:F3344:22697266G->A', 'G2:F3536:23768744C->T', 'G2:L89:7978725C->T', 'G2:M3579:21147058A->G', 'G2:P287:22072097G->T', 'G:CTS34:2681740G->A', 'G:CTS175:2785630A->T', 'G:CTS692:6955839A->G', 'G:CTS1283:7309873T->G', 'G:CTS2251:14235140C->T', 'G:CTS2271:14243137C->T', 'G:CTS2357:14273557C->T', 'G:CTS4238:15504804C->T', 'G:CTS4761:15802681C->T', 'G:CTS6957:17210745C->T', 'G:CTS7674:17610571G->A', 'G:CTS8023:17798903T->C', 'G:CTS8531:18070349G->C', 'G:CTS9011:18615020A->T', 'G:CTS9593:18979775T->A', 'G:CTS10026:19215139A->T', 'G:CTS10945:22848965A->G', 'G:CTS11228:23023554C->A', 'G:CTS11529:23151673T->C', 'G:CTS11911:23346582A->C', 'G:CTS13035:28783924C->A', 'G:F1383:8700380C->T', 'G:F1551:9448354A->G', 'G:L116:14989721C->G', 'G:L382:14469411C->A', 'G:L522:17533325A->C', 'G:M3450:6931141C->G', 'G:M3468:7744050T->C', 'G:M3472:7899682T->C', 'G:M3473:7927218C->T', 'G:M3474:7930724C->A', 'G:M3479:8231862G->C', 'G:M3480:8327892T->A', 'G:M3482:8454233G->A', 'G:M3485:8563874C->T', 'G:M3486:8600158A->T', 'G:M3597:21865624G->A', 'G:M3599:21939157G->A', 'G:M3628:23793740C->A', 'G:P257:14432928G->A', 'G:PF3134:15275200C->G', 'G:U21:15204710A->C', 'G2a:Z3240:10060449A->G', 'G2:CTS4413:15635425T->C', 'G2:CTS4703:15776024C->T', 'G2:CTS6316:16817402C->T', 'G2:F1647:9907842G->T', 'G2:F2319:16903051A->T', 'G2:M3465:7571775G->T', 'G2:PF2909:13205148A->G', 'G2:PF3119:23739606G->T', 'G:CTS373:6716150T->C', 'G:CTS995:7132348G->C', 'G:CTS1612:13987230A->G', 'G:CTS2120:14188094G->T', 'G:CTS2136:14195292A->G', 'G:CTS2517:14338503C->T', 'G:CTS4101:15397649A->G', 'G:CTS4523:15693336G->A', 'G:CTS4749:15797043A->G', 'G:CTS5317:16203361G->C', 'G:CTS5504:16325291T->C', 'G:CTS5640:16408569G->A', 'G:CTS9710:19033112G->A', 'G:CTS9894:19124322A->T', 'G:CTS10721:22729194C->T', 'G:CTS11907:23343857C->G', 'G:L154:8614138T->G', 'G:L402:15204708T->G', 'G:M3266:8422993T->A', 'G:M3464:7537950C->T', 'G:M3470:7830068T->C', 'G:M3580:21162869C->G', 'G:M3582:21334507G->T', 'G:M3585:21412501G->A', 'G:M3586:21447363A->G', 'G:S1435:13658486C->G', 'G:U12:14639427A->C', 'G2a:CTS6753:17090976C->T', 'G2:CTS5666:16424034C->T', 'G:CTS1010:7143549C->T', 'G:CTS4479:15667235G->A', 'G:CTS5757:16469840A->G', 'G:CTS10706:22714204G->T', 'G:CTS12654:28658660G->T', 'G:M3477:8121059G->A', 'G:M3595:21671839C->T', 'G2a2a1a2:L91:21645555G->C', 'G2a2a1:PF3170:18090604G->A', 'G2a2a:PF3147:7738069G->A', 'G2a2a:PF3159:14815695C->G', 'G2a2a:PF3181:21808944C->A', 'G2a2a:PF3184:22576860C->T', 'G2a2a:PF3185:22894488C->T', 'G:CTS827:7038432C->G', 'G2a2a1a2:PF3233:8895958T->C', 'G2a2a1:PF3155:14006343T->C', 'G2a2a:PF3175:18962113C->T', 'G2a2a:Z6178:7245721G->A', 'G2a2a:PF3150:8476569T->C', 'G2a2a:PF3151:9785736A->G', 'G2a:CTS11463:23122426G->A', 'G2:CTS4136:15421357G->A', 'G:CTS2125:14190447A->Ghet', 'G:CTS6073:16651032G->A', 'G:M3248:7565637G->A', 'G:CTS1139:7231638A->G', 'G:M3514:14199646A->T']
mitopathos	[{'allele': '14582G', 'position': 14582, 'status': 'Reported: individually neutral variants causing LHON in combination', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND6'], 'diseases': ['LHON synergistic combo 14258A + 14582G']}]