I2529

FASTA

Metadata

Reference

Data

identifier	I2529
alternative_identifiers	['YABA4']
country	Bulgaria
continent	Europe
region	Balkans
culture	Bulgaria_Neolithic
epoch	Neolithic
group	NEBA
comment	-
latitude	42.099998474121094
longitude	25.75
sex	M
site	Yabalkovo
site_detail	-
mt_hg	T1a
ychr_hg	I2a2
year_from	-5726
year_to	-5575
date_detail	5726-5575 calBCE (6750±40 BP, Poz-81117)
bp	6750±40
c14_lab_code	Poz-81117
c14_sample_tag	True
c14_layer_tag	-
avg_coverage	-
sequence_source	bam
reference	Mathieson et al. 2018. The genomic history of southeastern Europe. Nature, 555(7695), 197-203. (link)
data_link	https://www.ebi.ac.uk/ena/data/view/PRJEB22652
ychr_snps	['I2:M438:16638804A->G', 'I:CTS2387:14286853T->C', 'I:CTS10941:22845794A->G', 'I:FGC2412:21689728A->G', 'I:FGC2415:13835003T->C', 'I:FI2:8382265C->G', 'I:L578:8267857G->A', 'I:L758:8536868C->G', 'I:PF3794:21067903C->T', 'I:CTS6231:16751000C->T', 'I:PF3817:21939618G->A', 'I:PF3836:22525421T->G', 'I:CTS646:6926038T->A', 'I:PF3837:22573702G->A', 'I2a2:L35:22725379C->A', 'I2a2:L368:6931594C->T', 'I2a2:P218:17493630T->G']
mitopathos	[{'allele': '11251G', 'position': 11251, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-ND4'], 'diseases': ['Reduced risk of PD']}, {'allele': '15928A', 'position': 15928, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-TT'], 'diseases': ['Multiple Sclerosis / idiopathic repeat miscarriage / AD protection']}, {'allele': '16189C', 'position': 16189, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CR'], 'diseases': ['Diabetes / Cardiomyopathy /cancer risk / mtDNA copy nbr / Metabolic Syndrome / Melanoma patients']}, {'allele': '4917G', 'position': 4917, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND2'], 'diseases': ['LHON / Insulin Resistance / AMD / NRTI-PN']}]