I2532

FASTA

Metadata

Reference

Data

identifier I2532
alternative_identifiers ['ROM1', 'P1 square 1 -3', 'M1', '3.15m', 'Level 5c']
country Romania
continent Europe
region Balkans
culture Romania_EN
epoch Neolithic
group NEBA
comment -
latitude 45.47999954223633
longitude 27.0
sex M
site Coțatcu
site_detail -
mt_hg K1a2
ychr_hg G2a2b2b
year_from -5715
year_to -5626
date_detail 5715-5626 calBCE (6755±30 BP, PSUAMS-1747)
bp 6755±30
c14_lab_code PSUAMS-1747
c14_sample_tag True
c14_layer_tag -
avg_coverage -
sequence_source bam
reference Mathieson et al. 2018. The genomic history of southeastern Europe. Nature, 555(7695), 197-203. (link)
data_link https://www.ebi.ac.uk/ena/data/view/PRJEB22652
ychr_snps ['G2a2b:F2535:17589788C->T', 'G2a2b:L32:14692227T->C', 'G2a2b:L190:18759690C->T', 'G2a2:CTS4367:15615340C->G', 'G2a:CTS6630:17022002C->T', 'G2a:F3088:20813445G->A', 'G2a:F4086:7727677C->T', 'G2a:L31:14028148C->A', 'G2a:M3397:21605685G->C', 'G2a:M3408:22109159G->C', 'G2a:P15:23244026C->T', 'G2a:PF3141:23973594T->G', 'G2:CTS7662:17597715C->T', 'G2:CTS10089:19248446G->A', 'G2:F1239:8482393C->T', 'G2:F1294:8545324T->A', 'G2:F3198:21401188G->T', 'G2:F3344:22697266G->A', 'G2:F3536:23768744C->T', 'G2:L89:7978725C->T', 'G2:M3579:21147058A->G', 'G2:P287:22072097G->T', 'G:CTS34:2681740G->A', 'G:CTS692:6955839A->G', 'G:CTS1283:7309873T->G', 'G:CTS2271:14243137C->T', 'G:CTS2357:14273557C->T', 'G:CTS2506:14333087C->A', 'G:CTS4238:15504804C->T', 'G:CTS4761:15802681C->T', 'G:CTS6957:17210745C->T', 'G:CTS7269:17393643T->C', 'G:CTS8023:17798903T->C', 'G:CTS9011:18615020A->T', 'G:CTS10945:22848965A->G', 'G:CTS11529:23151673T->C', 'G:CTS11911:23346582A->C', 'G:CTS13035:28783924C->A', 'G:F1383:8700380C->T', 'G:F1551:9448354A->G', 'G:L116:14989721C->G', 'G:L382:14469411C->A', 'G:L522:17533325A->C', 'G:L837:17853245A->G', 'G:M3450:6931141C->G', 'G:M3468:7744050T->C', 'G:M3472:7899682T->C', 'G:M3473:7927218C->T', 'G:M3474:7930724C->A', 'G:M3479:8231862G->C', 'G:M3480:8327892T->A', 'G:M3485:8563874C->T', 'G:M3486:8600158A->T', 'G:M3593:21648433C->G', 'G:M3597:21865624G->A', 'G:M3599:21939157G->A', 'G:M3609:22651339C->T', 'G:P257:14432928G->A', 'G:PF2918:13679469G->A', 'G:PF2920:13824120T->G', 'G:PF3134:15275200C->G', 'G:U21:15204710A->C', 'G2a2b:CTS10006:19205722C->T', 'G2:CTS4264:15528792T->C', 'G2:CTS4413:15635425T->C', 'G2:CTS6316:16817402C->T', 'G2:CTS6742:17088129G->C', 'G2:F1189:8427005A->G', 'G2:F1647:9907842G->T', 'G2:F3226:21663882C->A', 'G2:L156:17174741A->T', 'G2:PF2909:13205148A->G', 'G:CTS995:7132348G->C', 'G:CTS1612:13987230A->G', 'G:CTS2120:14188094G->T', 'G:CTS2125:14190447A->G', 'G:CTS2136:14195292A->G', 'G:CTS2517:14338503C->T', 'G:CTS4101:15397649A->G', 'G:CTS4523:15693336G->A', 'G:CTS5317:16203361G->C', 'G:CTS5504:16325291T->C', 'G:CTS5640:16408569G->A', 'G:CTS9894:19124322A->T', 'G:CTS11294:23059496G->A', 'G:L402:15204708T->G', 'G:M3264:8318375G->T', 'G:M3266:8422993T->A', 'G:M3471:7840218C->A', 'G:M3481:8387539G->A', 'G:M3580:21162869C->G', 'G:M3582:21334507G->T', 'G:M3585:21412501G->A', 'G:PF2956:14993358A->G', 'G:S1435:13658486C->G', 'G2a2b:CTS1180:7256000A->G', 'G2a:CTS6753:17090976C->T', 'G:CTS1010:7143549C->T', 'G:CTS5757:16469840A->G', 'G:CTS10706:22714204G->T', 'G:CTS12654:28658660G->T', 'G:M3477:8121059G->A', 'G:CTS827:7038432C->G', 'G:CTS5837:16499780T->A', 'G2a:CTS9318:18819146T->A', 'G:M3248:7565637G->A', 'G2a2b2b:PF3321:7163800G->A', 'G2a2b2b:F705:2659191T->C', 'G2a2b2b:CTS5434:16271769A->G', 'G2a2b2b:F1581:9646643G->C', 'G2a2b2b:F1760:14323704T->C', 'G2a2b2b:F2419:17192221G->A', 'G2a2b2b:PF3359:7877472G->A', 'G2a2b2b:PF3418:21332310G->A', 'G:CTS189:2795691G->A']
mitopathos [{'allele': '10398G', 'position': 10398, 'status': 'Reported / lineage L & M marker / also hg IJK', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND3'], 'diseases': ['PD protective factor / longevity / altered cell pH / metabolic syndrome / breast cancer risk / Leigh Syndrome risk / ADHD / cognitive decline / SCA2 age of onset / Fuchs endothelial corneal dystrophy']}, {'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '13708A', 'position': 13708, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-ND5'], 'diseases': ['LHON / Increased MS risk / higher freq in PD-ADS']}, {'allele': '16093C', 'position': 16093, 'status': 'Reported', 'homoplasmy': '-', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['Cyclic Vomiting Syndrome']}, {'allele': '9055A', 'position': 9055, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ATP6'], 'diseases': ['PD protective factor']}]