I2568

FASTA

Metadata

Reference

Data

identifier I2568
alternative_identifiers ['GENSCOT15', 'Burial 10', 'Cist 2']
country Great Britain
continent Europe
region British Isles
culture Bell Beaker
epoch Bronze Age
group BBC
comment -
latitude 55.970001220703125
longitude -2.444000005722046
sex M
site Dryburn Bridge, East Lothian, Scotland
site_detail -
mt_hg U5a1b1g
ychr_hg R1b1a1a2a1a2c1
year_from -2286
year_to -2038
date_detail 2286-2038 calBCE (3755±35 BP, SUERC-4078)
bp 3755±35
c14_lab_code SUERC-4078
c14_sample_tag True
c14_layer_tag -
avg_coverage 714.7579956054688
sequence_source bam
reference Olalde et al. 2018. The Beaker phenomenon and the genomic transformation of northwest Europe. Nature, 555(7695), 190-196. (link)
data_link http://www.ebi.ac.uk/ena/data/view/PRJEB23635
ychr_snps -
mitopathos [{'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '16192T', 'position': 16192, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-CR'], 'diseases': ['Melanoma patients']}, {'allele': '16270T', 'position': 16270, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-CR'], 'diseases': ['Melanoma patients']}, {'allele': '310C', 'position': 310, 'status': 'Reported', 'homoplasmy': '<NA>', 'heteroplasmy': '<NA>', 'locus': ['MT-CR'], 'diseases': ['Possible protective factor for normal tension glaucoma']}]