I2574

FASTA

Metadata

Reference

Data

identifier	I2574
alternative_identifiers	['NFC07151']
country	Great Britain
continent	Europe
region	British Isles
culture	Wales_MBA
epoch	Bronze Age
group	BABI
comment	-
latitude	53.33000183105469
longitude	-3.7799999713897705
sex	F
site	North Face Cave, Llandudno, North Wales
site_detail	-
mt_hg	U5a1a2b
ychr_hg	-
year_from	-1414
year_to	-1227
date_detail	1414-1227 calBCE (3065±36 BP, SUERC-62072)
bp	3065±36
c14_lab_code	SUERC-62072
c14_sample_tag	True
c14_layer_tag	-
avg_coverage	985.864990234375
sequence_source	bam
reference	Olalde et al. 2018. The Beaker phenomenon and the genomic transformation of northwest Europe. Nature, 555(7695), 190-196. (link)
data_link	http://www.ebi.ac.uk/ena/data/view/PRJEB23635
ychr_snps	-
mitopathos	[{'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '16270T', 'position': 16270, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-CR'], 'diseases': ['Melanoma patients']}, {'allele': '310C', 'position': 310, 'status': 'Reported', 'homoplasmy': '<NA>', 'heteroplasmy': '<NA>', 'locus': ['MT-CR'], 'diseases': ['Possible protective factor for normal tension glaucoma']}]