I2606
FASTA
Metadata
Reference
Data
| identifier | I2606 |
|---|---|
| alternative_identifiers | ['DBC 96', 'SK 5856'] |
| country | Great Britain |
| continent | Europe |
| region | British Isles |
| culture | England_N |
| epoch | Neolithic |
| group | NEBI |
| comment | - |
| latitude | 51.49274826049805 |
| longitude | -0.6654019951820374 |
| sex | M |
| site | Eton Rowing Course, Buckinghamshire, England |
| site_detail | - |
| mt_hg | K1a+195 |
| ychr_hg | I2a2a1 |
| year_from | -3330 |
| year_to | -2900 |
| date_detail | 3330-2900 BCE |
| bp | - |
| c14_lab_code | - |
| c14_sample_tag | - |
| c14_layer_tag | - |
| avg_coverage | 93.65879821777344 |
| sequence_source | bam |
| reference | Olalde et al. 2018. The Beaker phenomenon and the genomic transformation of northwest Europe. Nature, 555(7695), 190-196. (link) |
| data_link | http://www.ebi.ac.uk/ena/data/view/PRJEB23635 |
| ychr_snps | - |
| mitopathos | [{'allele': '10398G', 'position': 10398, 'status': 'Reported / lineage L & M marker / also hg IJK', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND3'], 'diseases': ['PD protective factor / longevity / altered cell pH / metabolic syndrome / breast cancer risk / Leigh Syndrome risk / ADHD / cognitive decline / SCA2 age of onset / Fuchs endothelial corneal dystrophy']}, {'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '195C', 'position': 195, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['BD-associated / melanoma pts']}, {'allele': '9055A', 'position': 9055, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ATP6'], 'diseases': ['PD protective factor']}] |
I2606
