I2657

FASTA

Metadata

Reference

Data

identifier I2657
alternative_identifiers ['GENSCOT26']
country Great Britain
continent Europe
region British Isles
culture Scotland_N
epoch Neolithic
group NEBI
comment -
latitude 56.41999816894531
longitude -5.4720001220703125
sex M
site Macarthur Cave, Oban, Argyll and Bute, Scotland
site_detail -
mt_hg W1+119
ychr_hg I2a2a
year_from -3951
year_to -3780
date_detail 3951-3780 calBCE (5052±30 BP, SUERC-68701)
bp 5052±30
c14_lab_code SUERC-68701
c14_sample_tag True
c14_layer_tag -
avg_coverage 110.18299865722656
sequence_source bam
reference Olalde et al. 2018. The Beaker phenomenon and the genomic transformation of northwest Europe. Nature, 555(7695), 190-196. (link)
data_link http://www.ebi.ac.uk/ena/data/view/PRJEB23635
ychr_snps -
mitopathos [{'allele': '12705T', 'position': 12705, 'status': 'Reported', 'homoplasmy': '<NA>', 'heteroplasmy': '<NA>', 'locus': ['MT-CO1'], 'diseases': ['Possible protective factor for normal tension glaucoma']}, {'allele': '195C', 'position': 195, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['BD-associated / melanoma pts']}, {'allele': '310C', 'position': 310, 'status': 'Reported', 'homoplasmy': '<NA>', 'heteroplasmy': '<NA>', 'locus': ['MT-CR'], 'diseases': ['Possible protective factor for normal tension glaucoma']}, {'allele': '5460A', 'position': 5460, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-ND2'], 'diseases': ['AD / PD / LHON']}]