identifier I2660
alternative_identifiers ['GENSCOT29']
country Great Britain
continent Europe
region British Isles
culture Scotland_N
epoch Neolithic
group NEBI
comment -
latitude 56.40999984741211
longitude -5.4710001945495605
sex M
site Distillery Cave, Oban, Argyll and Bute, Scotland
site_detail -
mt_hg U5a2+16194
ychr_hg I2a2a1a1a
year_from -3513
year_to -3352
date_detail 3513-3352 calBCE (4631±29 BP, SUERC-68703)
bp 4631±29
c14_lab_code SUERC-68703
c14_sample_tag True
c14_layer_tag -
avg_coverage 110.18299865722656
sequence_source bam
reference Olalde et al. 2018. The Beaker phenomenon and the genomic transformation of northwest Europe. Nature, 555(7695), 190-196. (link)
data_link http://www.ebi.ac.uk/ena/data/view/PRJEB23635
ychr_snps -
mitopathos [{'allele': '12705T', 'position': 12705, 'status': 'Reported', 'homoplasmy': '<NA>', 'heteroplasmy': '<NA>', 'locus': ['MT-CO1'], 'diseases': ['Possible protective factor for normal tension glaucoma']}, {'allele': '195C', 'position': 195, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['BD-associated / melanoma pts']}, {'allele': '310C', 'position': 310, 'status': 'Reported', 'homoplasmy': '<NA>', 'heteroplasmy': '<NA>', 'locus': ['MT-CR'], 'diseases': ['Possible protective factor for normal tension glaucoma']}, {'allele': '5460A', 'position': 5460, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-ND2'], 'diseases': ['AD / PD / LHON']}]